A string of emerge failures

Message

fstephens · Post by **fstephens** » Wed Jun 14, 2006 10:19 pm

Seems like half of what I try to update fails to emerge. This has been going on for a few weeks and is getting really annoying. Fist it was Dia. I searched the forums and didn't find an answer that worked for me, so I just blocked upgrading it for now. It's been a while so I don't remember the actuall errors, but maybe some one can spot a common thread here.

Various KDE sub-packages fail, like KDevelop. I read the guide to moving to modular KDE, but perhaps I missed something. I have NOT moved to modular X yet, but that shouldn't matter right?
At least a couple of these failures had this line in the log:
!!! died running emake, kde_src_compile:make
(sorry, thats all I can remember)

Ok, here is the latest one:

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./../glib/glibmm/.libs/libglibmm-2.4.so: undefined reference to `sigc::internal::signal_impl::insert(std::_List_iterator<sigc::slot_base>, sigc::slot_base const&)'
../../glib/glibmm/.libs/libglibmm-2.4.so: undefined reference to `sigc::internal::signal_impl::erase(std::_List_iterator<sigc::slot_base>)'
collect2: ld returned 1 exit status
make[3]: *** [test] Error 1
make[3]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/glibmm-2.8.4/work/glibmm-2.8.4/tests/glibmm_value'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/glibmm-2.8.4/work/glibmm-2.8.4/tests'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/glibmm-2.8.4/work/glibmm-2.8.4'
make: *** [all] Error 2
!!! ERROR: dev-cpp/glibmm-2.8.4 failed.
Call stack:
ebuild.sh, line 1539: Called dyn_compile
ebuild.sh, line 939: Called src_compile
ebuild.sh, line 1248: Called gnome2_src_compile
gnome2.eclass, line 64: Called die
!!! compile failure
!!! If you need support, post the topmost build error, and the call stack if relevant.
(8 of 13) Compiling/Merging dev-cpp/glibmm-2.8.4

I apologize for not being more specifice on the others, but if I can solve this one, I'll retry the other fail emerges and report back.
Any help greatly appreciated!
Thanks

sugar · Post by **sugar** » Thu Jun 15, 2006 8:03 am

Whats version is gcc?

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gcc --version

fstephens · Post by **fstephens** » Thu Jun 15, 2006 6:21 pm

Oops! It is gcc (GCC) 3.4.6
I was trying to update the gcc version used, but these type problems predate that. Maybe I left things in a mixed up state?

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gcc-config --list-profiles
 [1] i686-pc-linux-gnu-3.3.6
 [2] i686-pc-linux-gnu-3.3.6-hardened
 [3] i686-pc-linux-gnu-3.3.6-hardenednopie
 [4] i686-pc-linux-gnu-3.3.6-hardenednopiessp
 [5] i686-pc-linux-gnu-3.3.6-hardenednossp
 [6] i686-pc-linux-gnu-3.4.6 *
 [7] i686-pc-linux-gnu-3.4.6-hardened
 [8] i686-pc-linux-gnu-3.4.6-hardenednopie
 [9] i686-pc-linux-gnu-3.4.6-hardenednopiessp
 [10] i686-pc-linux-gnu-3.4.6-hardenednossp

Should I go back to 3.3.6?
Thanks.

didl · Post by **didl** » Thu Jun 15, 2006 8:45 pm

Please post your emerge --info!

redbeardmcg · Post by **redbeardmcg** » Thu Jun 15, 2006 9:10 pm

I'm glad you posted this. I have also been experiencing a number of emerge issues. Some of the most recent that wont take are thunderbird, open office, etc... None of the errors are ever the same, and I just keep working through things, usually solving them by masking the newest version of the package. What happened to portage? I know I am not the only one this is happening to, but it is (extremely) frustrating.

BlackMagicM66 · Post by **BlackMagicM66** » Fri Jun 16, 2006 2:01 am

Try re-emerging libsigc++. This cleared up the same problem for me.

I have to give credit to juniper as I got the idea from a post of his while researching this issue.

Hope it fixes your problem.

fstephens · Post by **fstephens** » Fri Jun 16, 2006 7:27 pm

OK, here it is. Sorry for the delay- a root canal keep me from thinking about it the last couple of days!

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$ emerge --info
Portage 2.1 (default-linux/x86/2006.0, gcc-3.4.6, glibc-2.3.6-r3, 2.6.13-gentoo-r5 i686)
=================================================================
System uname: 2.6.13-gentoo-r5 i686 AMD Athlon(tm) XP 2400+
Gentoo Base System version 1.6.14
distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled]
ccache version 2.3 [enabled]
dev-lang/python:     2.3.5, 2.4.3-r1
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.3
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1
sys-devel/binutils:  2.16.1-r2
sys-devel/gcc-config: 1.3.13-r2
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.4.19, 2.6.11-r2
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-march=athlon-xp -O2 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.1/share/config /usr/kde/3.2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/lib/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-march=athlon-xp -O2 -pipe"
DISTDIR="/mnt/hdb6/portage/distdir"
FEATURES="autoconfig ccache distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="ftp://ftp.du.se/pub/os/gentoo http://gentoo.netnitco.net http://fido.online.kz/gentoo http://gentoo.inode.at/ ftp://ftp.uoi.gr/mirror/OS/gentoo/"
MAKEOPTS="-j2"
PKGDIR="/mnt/hdb6/protage/pkgdir"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'"
PORTAGE_TMPDIR="/mnt/hdb6/portage/tmpdir"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage"
USE="x86 3dnow 3dnowext X alsa apache2 apm arts avi berkdb bitmap-fonts cli crypt cups dri eds emboss encode esd foomaticdb fortran gdbm gif gnome gpm gstreamer gtk gtk2 imlib ipv6 isdnlog jpeg kde libg++ libwww mad mikmod mmx motif mp3 mpeg mplayer ncurses nls nptl ogg ooo-kde opengl oss pam pcre pdflib perl png ppds pppd python qt quicktime readline reflection sdl session spell spl sqlite3 sse ssl tcpd truetype truetype-fonts type1-fonts ucs4 udev usb vorbis win32codecs wxwin wxwindows xinerama xml xmms xorg xv zlib elibc_glibc kernel_linux userland_GNU"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS

fstephens · Post by **fstephens** » Sat Jun 17, 2006 12:59 am

Note that I am sometimes using Kuroo 0.80.2 , which says "using KDE 3.4.3". So I still think something didn't go right with the upgrade to KDE 3.5.2. Kuroo doesen't seem to notice if I have done an emerge --sync. It still wants to do an update every time I start it.

Per the suggestion here I did re-emerge libsigc++. I was able to emerge a few packages including KDevelop, xine-lib, iptables & gst-plugins-alsa. Dia still fails, but I think that may be a seprate issue. I read something in the forums a while back relating to Dia not emerging. But the suggestions didn't work for me, so in case anyone has a quick answer here is the emege error:

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file:///etc/xml/catalog:1: parser error : Start tag expected, '<' not found
PUBLIC "-//OASIS//DTD DocBook XML V4.1.2//EN" "//etc/xml/docbookx.dtd"
^
I/O error : Attempt to load network entity http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl
warning: failed to load external entity "http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl"
cannot parse http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl
make[3]: *** [dia.1] Error 4
make[3]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1/doc/en'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1/doc'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1'
make: *** [all] Error 2

!!! ERROR: app-office/dia-0.95.1 failed.
Call stack:
  ebuild.sh, line 1539:   Called dyn_compile
  ebuild.sh, line 939:   Called src_compile
  ebuild.sh, line 1248:   Called gnome2_src_compile
  gnome2.eclass, line 64:   Called die

!!! compile failure

sugar · Post by **sugar** » Sat Jun 17, 2006 2:27 am

I seemed to be getting a lot of compile errors, so I upgraded to gcc 3.4 and now everything is good as gold.

I suspect that you need to run

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emerge --oneshot sys-libs/libstdc++-v3

I could be wrong. Someone who can read the compiler output will probably be able to diagnose you problem better.

Philantrop · Post by **Philantrop** » Sun Jun 18, 2006 7:12 am

I/O error : Attempt to load network entity http://[...]

I'd suggest to just try again. This might have been a temporary problem with your network connection.

fstephens · Post by **fstephens** » Sat Jun 24, 2006 6:46 pm

Well.........
I did

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emerge --oneshot sys-libs/libstdc++-v3

and then some emerges in Kuroo (makes it easy to see the log files).
here is the result of one that failed (now I'm doing KDE stuff & Xorg-we'll see how that goes)

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touch omf_timestamp
file:///etc/xml/catalog:1: parser error : Start tag expected, '<' not found
PUBLIC "-//OASIS//DTD DocBook XML V4.1.2//EN" "//etc/xml/docbookx.dtd"
^
I/O error : Attempt to load network entity http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl
warning: failed to load external entity "http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl"
cannot parse http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl
make[3]: *** [dia.1] Error 4
make[3]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1/doc/en'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1/doc'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1'
make: *** [all] Error 2
!!! ERROR: app-office/dia-0.95.1 failed.
Call stack:
ebuild.sh, line 1539: Called dyn_compile
ebuild.sh, line 939: Called src_compile
ebuild.sh, line 1248: Called gnome2_src_compile
gnome2.eclass, line 64: Called die
!!! compile failure

so I don't think it is a temporary network problem.
Thanks for the tips guys! keep them coming.

fstephens · Post by **fstephens** » Sat Jun 24, 2006 6:53 pm

I didn't get far in the KDE compile- it died allready.

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xvidextwrap.cpp:(.gnu.linkonce.t._ZNSt6vectorISsSaISsEE5eraseEN9__gnu_cxx17__normal_iteratorIPSsS1_EES5_+0x77): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::_Rep::_S_empty_rep_storage'
xvidextwrap.cpp:(.gnu.linkonce.t._ZNSt6vectorISsSaISsEE5eraseEN9__gnu_cxx17__normal_iteratorIPSsS1_EES5_+0xca): undefined reference to `__gnu_cxx::__exchange_and_add(int volatile*, int)'
collect2: ld returned 1 exit status
make[4]: *** [kcm_kgamma.la] Error 1
make[4]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/kdegraphics-3.5.2/work/kdegraphics-3.5.2/kgamma/kcmkgamma'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/kdegraphics-3.5.2/work/kdegraphics-3.5.2/kgamma/kcmkgamma'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/kdegraphics-3.5.2/work/kdegraphics-3.5.2/kgamma'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/kdegraphics-3.5.2/work/kdegraphics-3.5.2'
make: *** [all] Error 2
!!! ERROR: kde-base/kdegraphics-3.5.2 failed.
Call stack:
ebuild.sh, line 1539: Called dyn_compile
ebuild.sh, line 939: Called src_compile
kdegraphics-3.5.2.ebuild, line 72: Called kde_src_compile
kde.eclass, line 164: Called kde_src_compile 'all'
kde.eclass, line 299: Called kde_src_compile 'myconf' 'configure' 'make'
kde.eclass, line 295: Called die
!!! died running emake, kde_src_compile:make

Starting to get discoraged here....

sugar · Post by **sugar** » Sat Jun 24, 2006 7:31 pm

fstephens wrote:Well.........
I did

Code: Select all

emerge --oneshot sys-libs/libstdc++-v3

and then some emerges in Kuroo (makes it easy to see the log files).
here is the result of one that failed (now I'm doing KDE stuff & Xorg-we'll see how that goes)

Code: Select all

touch omf_timestamp
file:///etc/xml/catalog:1: parser error : Start tag expected, '<' not found
PUBLIC "-//OASIS//DTD DocBook XML V4.1.2//EN" "//etc/xml/docbookx.dtd"
^
I/O error : Attempt to load network entity http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl
warning: failed to load external entity "http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl"
cannot parse http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl
make[3]: *** [dia.1] Error 4
make[3]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1/doc/en'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1/doc'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/mnt/hdb6/portage/tmpdir/portage/dia-0.95.1/work/dia-0.95-1'
make: *** [all] Error 2
!!! ERROR: app-office/dia-0.95.1 failed.
Call stack:
ebuild.sh, line 1539: Called dyn_compile
ebuild.sh, line 939: Called src_compile
ebuild.sh, line 1248: Called gnome2_src_compile
gnome2.eclass, line 64: Called die
!!! compile failure

so I don't think it is a temporary network problem.
Thanks for the tips guys! keep them coming.

http://bugs.ethereal.com/bugzilla/show_bug.cgi?id=325

maybe you need to emerge build-docbook-catalog?

fstephens · Post by **fstephens** » Wed Jul 12, 2006 3:16 pm

Well, the last thing I tried was changing the default GCC back to 3.3.6 from 3.4.6. That seemed to work.
I can now compile even KDE apps. The question is - why, and how can I fix it so I can use the later GCC?
Could GCC 3,4,6 be corrupted somehow? After reverting to 3.3.6 I re-emerged 3.4.6 , but I haven't tried it yet. Are there any real advantages for a normal user from the later versions of GCC?
Any suggestions appreciated.

bmeagle · Post by **bmeagle** » Fri Mar 07, 2008 7:20 pm

If you get the dia fail to load external source error just emerge docbook-xml-dtd.