emerge -u automake fauls

Message

nyowe · Post by **nyowe** » Sat Apr 02, 2005 10:20 pm

i seem to have an almost impossible problem updating one of my machines... emerge -uD world constantly fails right at the end of emerging automake (1.9.5) with the following error:

Code: Select all

 /bin/install -c -m 644 'configure.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/configure.am'
 /bin/install -c -m 644 'data.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/data.am'
 /bin/install -c -m 644 'dejagnu.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/dejagnu.am'
 /bin/install -c -m 644 'depend.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/depend.am'
 /bin/install -c -m 644 'depend2.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/depend2.am'
 /bin/install -c -m 644 'distdir.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/distdir.am'
 /bin/install -c -m 644 'footer.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/footer.am'
 /bin/install -c -m 644 'header-vars.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/header-vars.am'
 /bin/install -c -m 644 'header.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/header.am'
 /bin/install -c -m 644 'install.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/install.am'
 /bin/install -c -m 644 'inst-vars.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/inst-vars.am'
 /bin/install -c -m 644 'java.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/java.am'
 /bin/install -c -m 644 'lang-compile.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/lang-compile.am'
 /bin/install -c -m 644 'lex.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/lex.am'
 /bin/install -c -m 644 'library.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/library.am'
 /bin/install -c -m 644 'libs.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/libs.am'
 /bin/install -c -m 644 'libtool.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/libtool.am'
 /bin/install -c -m 644 'lisp.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/lisp.am'
 /bin/install -c -m 644 'ltlib.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/ltlib.am'
 /bin/install -c -m 644 'ltlibrary.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/ltlibrary.am'
 /bin/install -c -m 644 'mans-vars.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/mans-vars.am'
 /bin/install -c -m 644 'mans.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/mans.am'
 /bin/install -c -m 644 'multilib.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/multilib.am'
 /bin/install -c -m 644 'program.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/program.am'
 /bin/install -c -m 644 'progs.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/progs.am'
 /bin/install -c -m 644 'python.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/python.am'
 /bin/install -c -m 644 'remake-hdr.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/remake-hdr.am'
 /bin/install -c -m 644 'scripts.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/scripts.am'
 /bin/install -c -m 644 'subdirs.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/subdirs.am'
 /bin/install -c -m 644 'tags.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/tags.am'
 /bin/install -c -m 644 'texi-vers.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/texi-vers.am'
 /bin/install -c -m 644 'texibuild.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/texibuild.am'
 /bin/install -c -m 644 'texinfos.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/texinfos.am'
 /bin/install -c -m 644 'yacc.am' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/am/yacc.am'
make[3]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib/am'
make[2]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib/am'
make[2]: Entering directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib'
make[3]: Entering directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/automake-1.9" || mkdir -p -- "/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9"
 /bin/install -c -m 644 'COPYING' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/COPYING'
 /bin/install -c -m 644 'INSTALL' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/INSTALL'
 /bin/install -c -m 644 'texinfo.tex' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/texinfo.tex'
 /bin/install -c -m 644 'ansi2knr.c' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/ansi2knr.c'
 /bin/install -c -m 644 'ansi2knr.1' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/ansi2knr.1'
 /bin/install -c -m 644 'config-ml.in' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/config-ml.in'
test -z "/usr/share/automake-1.9" || mkdir -p -- "/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9"
 /bin/install -c -m 644 'config.guess' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/config.guess'
 /bin/install -c -m 644 'config.sub' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/config.sub'
 /bin/install -c -m 644 'install-sh' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/install-sh'
 /bin/install -c -m 644 'mdate-sh' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/mdate-sh'
 /bin/install -c -m 644 'missing' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/missing'
 /bin/install -c -m 644 'mkinstalldirs' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/mkinstalldirs'
 /bin/install -c -m 644 'elisp-comp' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/elisp-comp'
 /bin/install -c -m 644 'ylwrap' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/ylwrap'
 /bin/install -c -m 644 'acinstall' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/acinstall'
 /bin/install -c -m 644 'depcomp' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/depcomp'
 /bin/install -c -m 644 'compile' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/compile'
 /bin/install -c -m 644 'py-compile' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/py-compile'
 /bin/install -c -m 644 'symlink-tree' '/var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/symlink-tree'
make  install-data-hook
make[4]: Entering directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib'
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/config.guess
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/config.sub
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/install-sh
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/mdate-sh
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/missing
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/mkinstalldirs
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/elisp-comp
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/ylwrap
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/acinstall
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/depcomp
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/compile
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/py-compile
 chmod +x /var/tmp/portage/automake-1.9.5/image//usr/share/automake-1.9/symlink-tree
make[4]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib'
make[3]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib'
make[2]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib'
make[1]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/lib'
Making install in tests
make[1]: Entering directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/tests'
make[2]: Entering directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/tests'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/tests'
make[1]: Leaving directory `/var/tmp/portage/automake-1.9.5/work/automake-1.9.5/tests'
man:
info:
prepallstrip:
strip: i686-pc-linux-gnu-strip --strip-unneeded
strip: i686-pc-linux-gnu-strip --strip-unneeded
>>> Completed installing automake-1.9.5 into /var/tmp/portage/automake-1.9.5/image/

>>> Merging sys-devel/automake-1.9.5 to /
--- /usr/
--- /usr/bin/
>>> /usr/bin/automake-1.9
>>> /usr/bin/aclocal-1.9
--- /usr/share/
--- /usr/share/doc/
--- /usr/share/doc/automake-1.9.5/
>>> /usr/share/doc/automake-1.9.5/README.gz
>>> /usr/share/doc/automake-1.9.5/THANKS.gz
>>> /usr/share/doc/automake-1.9.5/TODO.gz
>>> /usr/share/doc/automake-1.9.5/NEWS.gz
>>> /usr/share/doc/automake-1.9.5/AUTHORS.gz
>>> /usr/share/doc/automake-1.9.5/ChangeLog.gz
--- /usr/share/info/
>>> /usr/share/info/automake1.9.info-1.gz
>>> /usr/share/info/automake1.9.info-2.gz
>>> /usr/share/info/automake1.9.info.gz
--- /usr/share/automake-1.9/
--- /usr/share/automake-1.9/am/
>>> /usr/share/automake-1.9/am/data.am
>>> /usr/share/automake-1.9/am/yacc.am
>>> /usr/share/automake-1.9/am/depend.am
>>> /usr/share/automake-1.9/am/header.am
>>> /usr/share/automake-1.9/am/depend2.am
>>> /usr/share/automake-1.9/am/libtool.am
>>> /usr/share/automake-1.9/am/footer.am
>>> /usr/share/automake-1.9/am/ltlibrary.am
>>> /usr/share/automake-1.9/am/libs.am
>>> /usr/share/automake-1.9/am/lisp.am
>>> /usr/share/automake-1.9/am/texibuild.am
>>> /usr/share/automake-1.9/am/remake-hdr.am
>>> /usr/share/automake-1.9/am/compile.am
>>> /usr/share/automake-1.9/am/mans-vars.am
>>> /usr/share/automake-1.9/am/mans.am
>>> /usr/share/automake-1.9/am/configure.am
>>> /usr/share/automake-1.9/am/distdir.am
>>> /usr/share/automake-1.9/am/tags.am
>>> /usr/share/automake-1.9/am/inst-vars.am
>>> /usr/share/automake-1.9/am/check.am
>>> /usr/share/automake-1.9/am/texi-vers.am
>>> /usr/share/automake-1.9/am/clean-hdr.am
>>> /usr/share/automake-1.9/am/install.am
>>> /usr/share/automake-1.9/am/program.am
>>> /usr/share/automake-1.9/am/subdirs.am
>>> /usr/share/automake-1.9/am/ltlib.am
>>> /usr/share/automake-1.9/am/lex.am
>>> /usr/share/automake-1.9/am/python.am
>>> /usr/share/automake-1.9/am/scripts.am
>>> /usr/share/automake-1.9/am/ansi2knr.am
>>> /usr/share/automake-1.9/am/library.am
>>> /usr/share/automake-1.9/am/header-vars.am
>>> /usr/share/automake-1.9/am/progs.am
>>> /usr/share/automake-1.9/am/texinfos.am
>>> /usr/share/automake-1.9/am/lang-compile.am
>>> /usr/share/automake-1.9/am/dejagnu.am
>>> /usr/share/automake-1.9/am/java.am
>>> /usr/share/automake-1.9/am/clean.am
>>> /usr/share/automake-1.9/am/multilib.am
>>> /usr/share/automake-1.9/compile
>>> /usr/share/automake-1.9/depcomp
>>> /usr/share/automake-1.9/elisp-comp
>>> /usr/share/automake-1.9/ansi2knr.1
>>> /usr/share/automake-1.9/ansi2knr.c
>>> /usr/share/automake-1.9/acinstall
>>> /usr/share/automake-1.9/config-ml.in
>>> /usr/share/automake-1.9/config.guess -> ../gnuconfig/config.guess
>>> /usr/share/automake-1.9/install-sh
>>> /usr/share/automake-1.9/config.sub -> ../gnuconfig/config.sub
>>> /usr/share/automake-1.9/missing
>>> /usr/share/automake-1.9/mkinstalldirs
>>> /usr/share/automake-1.9/mdate-sh
>>> /usr/share/automake-1.9/ylwrap
>>> /usr/share/automake-1.9/symlink-tree
>>> /usr/share/automake-1.9/INSTALL
>>> /usr/share/automake-1.9/texinfo.tex
>>> /usr/share/automake-1.9/COPYING
--- /usr/share/automake-1.9/Automake/
>>> /usr/share/automake-1.9/Automake/Options.pm
>>> /usr/share/automake-1.9/Automake/Item.pm
>>> /usr/share/automake-1.9/Automake/Wrap.pm
>>> /usr/share/automake-1.9/Automake/FileUtils.pm
>>> /usr/share/automake-1.9/Automake/Location.pm
>>> /usr/share/automake-1.9/Automake/Condition.pm
>>> /usr/share/automake-1.9/Automake/ChannelDefs.pm
>>> /usr/share/automake-1.9/Automake/VarDef.pm
>>> /usr/share/automake-1.9/Automake/General.pm
>>> /usr/share/automake-1.9/Automake/Configure_ac.pm
>>> /usr/share/automake-1.9/Automake/Rule.pm
>>> /usr/share/automake-1.9/Automake/Variable.pm
>>> /usr/share/automake-1.9/Automake/Channels.pm
>>> /usr/share/automake-1.9/Automake/DisjConditions.pm
>>> /usr/share/automake-1.9/Automake/XFile.pm
>>> /usr/share/automake-1.9/Automake/RuleDef.pm
>>> /usr/share/automake-1.9/Automake/Version.pm
>>> /usr/share/automake-1.9/Automake/Config.pm
>>> /usr/share/automake-1.9/Automake/ItemDef.pm
>>> /usr/share/automake-1.9/Automake/Struct.pm
>>> /usr/share/automake-1.9/py-compile
--- /usr/share/aclocal-1.9/
>>> /usr/share/aclocal-1.9/cond.m4
>>> /usr/share/aclocal-1.9/sanity.m4
>>> /usr/share/aclocal-1.9/depend.m4
>>> /usr/share/aclocal-1.9/mkdirp.m4
>>> /usr/share/aclocal-1.9/as.m4
>>> /usr/share/aclocal-1.9/header.m4
>>> /usr/share/aclocal-1.9/amversion.m4
>>> /usr/share/aclocal-1.9/install-sh.m4
>>> /usr/share/aclocal-1.9/auxdir.m4
!!! Failed to move /var/tmp/portage/automake-1.9.5/image/usr/share/aclocal-1.9/obsol-gt.m4 to /usr/share/aclocal-1.9/obsol-gt.m4
!!! [Errno 13] Permission denied

I have also noticed that the files obsol-gt.m4 obsol-lt.m4 and obsolete.m4 in the directory /usr/share/aclocal-1.9/ are inaccessible

Code: Select all

aclocal-1.9 # ls -l
ls: obsol-gt.m4: Permission denied
ls: obsol-lt.m4: Permission denied
ls: obsolete.m4: Permission denied
total 128
-rw-r--r--  1 root root  872 Apr  2 23:08 amversion.m4
-rw-r--r--  1 root root  728 Apr  2 23:08 as.m4
-rw-r--r--  1 root root 2438 Apr  2 23:08 auxdir.m4
-rw-r--r--  1 root root 1448 Jan 27 22:17 ccstdc.m4
-rw-r--r--  1 root root  957 Apr  2 23:08 cond.m4
-rw-r--r--  1 root root 6142 Apr  2 23:08 depend.m4
-rw-r--r--  1 root root 3177 Jan 27 22:17 depout.m4
-rw-r--r--  1 root root 1442 Jan 27 22:17 dmalloc.m4
-rw-r--r--  1 root root 1095 Jan 27 22:17 gcj.m4
-rw-r--r--  1 root root  494 Apr  2 23:08 header.m4
-rw-r--r--  1 root root 4632 Jan 27 22:17 init.m4
-rw-r--r--  1 root root  537 Apr  2 23:08 install-sh.m4
-rw-r--r--  1 root root 1145 Jan 27 22:17 lead-dot.m4
-rw-r--r--  1 root root 1219 Jan 27 22:17 lex.m4
-rw-r--r--  1 root root 2697 Jan 27 22:17 lispdir.m4
-rw-r--r--  1 root root 1470 Jan 27 22:17 maintainer.m4
-rw-r--r--  1 root root 2045 Jan 27 22:17 make.m4
-rw-r--r--  1 root root 1507 Jan 27 22:17 minuso.m4
-rw-r--r--  1 root root 1669 Jan 27 22:17 missing.m4
-rw-r--r--  1 root root 2645 Apr  2 23:08 mkdirp.m4
-rw-r--r--  1 root root 2222 Jan 27 22:17 multi.m4
-rw-r--r--  1 root root 1622 Jan 27 22:17 options.m4
-rw-r--r--  1 root root 1321 Jan 27 22:17 protos.m4
-rw-r--r--  1 root root 7637 Jan 27 22:17 python.m4
-rw-r--r--  1 root root 2497 Jan 27 22:17 regex.m4
-rw-r--r--  1 root root 1160 Jan 27 22:17 runlog.m4
-rw-r--r--  1 root root 1699 Apr  2 23:08 sanity.m4
-rw-r--r--  1 root root 1800 Jan 27 22:17 strip.m4
-rw-r--r--  1 root root 3595 Jan 27 22:17 tar.m4

I seem completely unable to alter these files as root. What could be going on here? How can i sort it out??
Here is my emerge info

Code: Select all

Portage 2.0.51.19 (default-linux/x86/2004.3, gcc-3.4.3-20050110, glibc-2.3.4.20050125-r1, 2.6.9-cko3 i686)
=================================================================
System uname: 2.6.9-cko3 i686 AMD Athlon(TM) XP 2400+
Gentoo Base System version 1.6.10
Python:              dev-lang/python-2.3.5 [2.3.5 (#1, Mar  2 2005, 21:35:45)]
dev-lang/python:     2.3.5
sys-devel/autoconf:  2.59-r6, 2.13
sys-devel/automake:  1.7.9-r1, 1.8.5-r3, 1.5, 1.4_p6, 1.6.3, 1.9.4
sys-devel/binutils:  2.15.92.0.2-r7
sys-devel/libtool:   1.5.10-r3
virtual/os-headers:  2.6.8.1-r4
ACCEPT_KEYWORDS="x86 ~x86"
AUTOCLEAN="yes"
CFLAGS="-O3 -march=athlon-xp -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/share/config /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d"
CXXFLAGS="-O3 -march=athlon-xp -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs autoconfig ccache distlocks sandbox sfperms"
GENTOO_MIRRORS="http://www.mirrorservice.org/sites/www.ibiblio.org/gentoo"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="x86 3dnow X alsa apache2 avi berkdb bitmap-fonts cdr crypt cups curl divx4linux dvb dvd emboss encode esd fam flac flash font-server foomaticdb fortran gd gdbm gif gphoto2 gpm gtk gtk2 gtkhtml imagemagick imlib ipv6 java jpeg kde lcms ldap libg++ libwww mad mikmod mmx mng motif mp3 mpeg mysql mysqli ncurses nls nptl nptlonly oggvorbis opengl oss pam pdflib perl php png python qt quicktime readline sdl spell sse ssl svg svga tcpd theora tiff truetype truetype-fonts type1-fonts userlocales v4l2 wmf xine xml2 xmms xpm xv xvid zlib"
Unset:  ASFLAGS, CBUILD, CTARGET, LANG, LC_ALL, LDFLAGS

dodeco · Post by **dodeco** » Sun Apr 03, 2005 3:18 pm

It could be a problem with bad blocks.
You could check your hardisk for bad blocks with the badblocks program (or e2fsck -c if you use ext2 or ext3).

nyowe · Post by **nyowe** » Mon Apr 04, 2005 9:25 am

thanks dodeco... that was indeed the case though i found out the hard way by doing a complete format and reinstall ... as a side note for anyone who might need this i saved my self a lot of time by breating binaries of all the software installed on my comp (qkpg -I -nc | xargs quickpkg ) basked up using rsync and the rest was easy (1 hour turnaround time)