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[SOLVED] kernel-install fails after emerging intel-microcode

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beastrabban
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[SOLVED] kernel-install fails after emerging intel-microcode

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Post by beastrabban » Fri Mar 20, 2026 3:23 am

Hi all,

This happened after I enabled the "initramfs" USE flag and re-emerged intel-microcode. The "dist-kernel" USE flag was already enabled system-wide. I'm having a hard time figuring out why exactly kernel-install is failing in the post-installation phase. Any help would be greatly appreciated.

Not sure if it's relevant, but I'm currently using a distribution kernel (gentoo-kernel) UKI with systemd, dracut and efistub. I also use systemd-gpt-auto-generator instead of an fstab file. I've had no issues prior to this point.

Relevant output of /var/tmp/portage/sys-firmware/intel-microcode-20260227_p20260227/temp/build.log:

Code: Select all

iucode_tool: Writing microcode firmware file(s) into /var/tmp/portage/sys-firmware/intel-microcode-20260227_p20260227/image/lib/firmware/intel-ucode
 * You only installed ucode(s) for all currently available (=online)
 * processor(s). Remember to re-emerge this package whenever you
 * change the system's processor model.
 * 
 * Assuming you do not have a separate /boot partition.
 * Assuming you do not have a separate /efi partition.
 * Assuming you do not have a separate /boot/efi partition.
 * Assuming you do not have a separate /boot/EFI partition.
 * Installing the kernel via installkernel ...
layout=uki set via config
INITRD_GENERATOR (dracut) set via config.
UKI_GENERATOR (dracut) set via config.
Loaded config.
MACHINE_ID=21539bbb68c1b6a20aae670269a4a1eb set via /etc/machine-id.
Found container virtualization none.
Loaded shared library 'libblkid.so.1' via dlopen().
/dev/nvme0n1p1: Partition has wrong PART_ENTRY_TYPE=c12a7328-f81f-11d2-ba4b-00a0c93ec93b for XBOOTLDR partition.
Couldn't find an XBOOTLDR partition.
Failed to check file system type of "/efi": No such file or directory
Using EFI System Partition at /boot as $BOOT_ROOT.
Using entry token: 21539bbb68c1b6a20aae670269a4a1eb
Assertion 'source->rfd >= 0 || source->rfd == AT_FDCWD' failed at src/kernel-install/kernel-install.c:155, function context_copy(). Aborting.
/var/tmp/portage/sys-firmware/intel-microcode-20260227_p20260227/temp/environment: line 704:  6484 Aborted                    (core dumped) ARCH=$(tc-arch-kernel) installkernel "${installkernel_args[@]}"
 * 
 * The kernel was not deployed successfully. Inspect the failure
 * in the logs above and once you resolve the problems please
 * run the equivalent of the following command to try again:
 * 
 *     installkernel 6.19.8-gentoo-dist /usr/src/linux/arch/x86/boot/bzImage /usr/src/linux/System.map /boot --all --verbose
 * ERROR: sys-firmware/intel-microcode-20260227_p20260227::gentoo failed (postinst phase):
 *   Kernel install failed, please fix the problems and run emerge --config
 * 
 * Call stack:
 *     ebuild.sh, line  143:  Called pkg_postinst
 *   environment, line 1238:  Called dist-kernel_reinstall_initramfs '/usr/src/linux' '6.19.8-gentoo-dist' '--all'
 *   environment, line  776:  Called dist-kernel_install_kernel '6.19.8-gentoo-dist' '/usr/src/linux/arch/x86/boot/bzImage' '/usr/src/linux/System.map' '/boot' '--all'
 *   environment, line  758:  Called die
 * The specific snippet of code:
 *           die "Kernel install failed, please fix the problems and run emerge --config";
 * 
 * If you need support, post the output of `emerge --info '=sys-firmware/intel-microcode-20260227_p20260227::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sys-firmware/intel-microcode-20260227_p20260227::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sys-firmware/intel-microcode-20260227_p20260227/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sys-firmware/intel-microcode-20260227_p20260227/temp/environment'.
 * Working directory: '/var/tmp/portage/sys-firmware/intel-microcode-20260227_p20260227/empty'
 * S: '/var/tmp/portage/sys-firmware/intel-microcode-20260227_p20260227/work'
 * FAILED postinst: 1
Full output of emerge --info '=sys-firmware/intel-microcode-20260227_p20260227::gentoo':

Code: Select all

Portage 3.0.77 (python 3.13.12-final-0, default/linux/amd64/23.0/no-multilib/systemd, gcc-15, glibc-2.43, 6.19.8-gentoo-dist x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.19.8-gentoo-dist-x86_64-11th_Gen_Intel-R-_Core-TM-_i5-1145G7_@_2.60GHz-with-glibc2.43
KiB Mem:    16089432 total,  13353784 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Thu, 19 Mar 2026 14:45:00 +0000
Head commit of repository gentoo: dc327f47cf4ed70b3592ae19d71f1df2cbd8847a
sh bash 5.3_p9
ld GNU ld (Gentoo 2.46.0 p1) 2.46.0
app-misc/pax-utils:        1.3.10::gentoo
app-shells/bash:           5.3_p9::gentoo
dev-build/autoconf:        2.72-r6::gentoo
dev-build/automake:        1.18.1::gentoo
dev-build/cmake:           4.2.3::gentoo
dev-build/libtool:         2.5.4::gentoo
dev-build/make:            4.4.1-r102::gentoo
dev-build/meson:           1.10.2::gentoo
dev-lang/perl:             5.42.0-r1::gentoo
dev-lang/python:           3.13.12::gentoo, 3.14.3::gentoo
dev-lang/rust-bin:         1.94.0::gentoo
llvm-core/clang:           21.1.8::gentoo, 22.1.1::gentoo
llvm-core/lld:             21.1.8::gentoo
llvm-core/llvm:            21.1.8::gentoo, 22.1.1::gentoo
sys-apps/baselayout:       2.18-r1::gentoo
sys-apps/sandbox:          2.46::gentoo
sys-apps/systemd:          260::gentoo
sys-devel/binutils:        2.46.0::gentoo
sys-devel/binutils-config: 5.6::gentoo
sys-devel/gcc:             15.2.1_p20260214::gentoo
sys-devel/gcc-config:      2.12.2::gentoo
sys-kernel/linux-headers:  6.19::gentoo (virtual/os-headers)
sys-libs/glibc:            2.43::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync1.ca.gentoo.org/gentoo-portage/
    priority: -1000
    volatile: False
    sync-rsync-verify-max-age: 3
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes

Binary Repositories:

gentoo
    location: /var/cache/binhost/gentoo
    priority: 1
    sync-uri: https://distfiles.gentoo.org/releases/amd64/binpackages/23.0/x86-64
    verify-signature: True

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -flto"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d"
CXXFLAGS="-march=native -O2 -pipe -flto"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -O2 -pipe -flto"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live compress-index config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe -flto"
GENTOO_MIRRORS="http://mirror.reengine.net/gentoo/ http://distfiles.gentoo.org"
LANG="en_CA.UTF-8"
LDFLAGS="-march=native -O2 -pipe -flto -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
PKGDIR="/var/cache/binpkgs"
PORTAGE_COMPRESS="bzip2"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RUSTFLAGS="-C target-cpu=native"
SHELL="/bin/bash"
USE="acl amd64 bzip2 cet crypt dbus dist-kernel gdbm iconv ipv6 libtirpc lto modules-sign ncurses nls openmp pam pcre policykit pulseaudio readline seccomp ssl systemd test-rust udev unicode vaapi vulkan wayland xattr zlib" ABI_X86="64" ADA_TARGET="gcc_15" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 avx512_bitalg avx512_vbmi2 avx512_vnni avx512_vp2intersect avx512_vpopcntdq avx512bw avx512cd avx512dq avx512f avx512ifma avx512vbmi avx512vl bmi1 bmi2 f16c fma3 pclmul popcnt rdrand sha sse3 sse4_1 sse4_2 ssse3 vpclmulqdq" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax navcom oncore skytraq superstar2 tsip tripmate tnt" GUILE_SINGLE_TARGET="3-0" GUILE_TARGETS="3-0" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LLVM_TARGETS="X86" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-3" POSTGRES_TARGETS="postgres17" PYTHON_SINGLE_TARGET="python3_13" PYTHON_TARGETS="python3_13" RUBY_TARGETS="ruby32 ruby33" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, SIZE, STRINGS, STRIP, YACC, YFLAGS

=================================================================
                        Package Settings
=================================================================

sys-firmware/intel-microcode-20260227_p20260227::gentoo was built with the following:
USE="dist-kernel hostonly initramfs split-ucode -vanilla"
Full output of emerge -pqv '=sys-firmware/intel-microcode-20260227_p20260227::gentoo':

Code: Select all

[ebuild   R   ] sys-firmware/intel-microcode-20260227_p20260227  USE="dist-kernel hostonly initramfs split-ucode -vanilla" 
Last edited by beastrabban on Sat Mar 21, 2026 3:57 pm, edited 1 time in total.
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Nowa
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Post by Nowa » Sat Mar 21, 2026 12:45 pm

Code: Select all

 Assertion 'source->rfd >= 0 || source->rfd == AT_FDCWD' failed at src/kernel-install/kernel-install.c:155, function context_copy(). Aborting. 
This looks like a bug in systemd's kernel-install.

Can you run 'emerge --config gentoo-kernel' or 'emerge --config gentoo-kernel-bin'? Does it fail with the same error? Could you try to rebuild sys-apps/systemd or sys-apps/systemd-utils?
OS: Gentoo 6.19.3-gentoo-dist, ~amd64, 23.0/desktop/plasma/systemd
MB: MSI Z370-A PRO
CPU: Intel Core i9-9900KS
GPU: Intel Arc A770 16GB & Intel UHD Graphics 630
SSD: Samsung 970 EVO Plus 2 TB
RAM: Crucial Ballistix 32GB DDR4-2400
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Nowa
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Post by Nowa » Sat Mar 21, 2026 12:48 pm

Looks like you hit this bug: https://github.com/systemd/systemd/issues/41226

You could try to patch systemd with the linked commit, in theory that should fix it.
OS: Gentoo 6.19.3-gentoo-dist, ~amd64, 23.0/desktop/plasma/systemd
MB: MSI Z370-A PRO
CPU: Intel Core i9-9900KS
GPU: Intel Arc A770 16GB & Intel UHD Graphics 630
SSD: Samsung 970 EVO Plus 2 TB
RAM: Crucial Ballistix 32GB DDR4-2400
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beastrabban
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Joined: Wed Feb 18, 2026 4:34 pm

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Post by beastrabban » Sat Mar 21, 2026 3:59 pm

Fixed in systemd-260-r2
https://bugs.gentoo.org/971388
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