sys-libs/pam-1.7.1-r2 fails to compile

Message

DenyAllow · Post by **DenyAllow** » Thu Nov 13, 2025 3:56 pm

Needed to update sys-libs/pam but got into compile phase fail.

The output of " emerge --info '=sys-libs/pam-1.7.1-r2::gentoo' ":

Code: Select all

Portage 3.0.69 (python 3.13.5-final-0, default/linux/amd64/23.0/desktop/systemd, gcc-14, glibc-2.41-r6, 6.12.41-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.12.41-gentoo-x86_64-Intel-R-_Core-TM-_i7-2670QM_CPU_@_2.20GHz-with-glibc2.41
KiB Mem:     6015496 total,   3280276 free
KiB Swap:    3007484 total,   3007484 free
Timestamp of repository gentoo: Thu, 13 Nov 2025 13:15:00 +0000
Head commit of repository gentoo: c44d7be1db0920da38ed44aa4ff82c31455a1ef1
sh bash 5.3_p3-r3
ld GNU ld (Gentoo 2.45 p3) 2.45.0
app-misc/pax-utils:        1.3.8::gentoo
app-shells/bash:           5.3_p3-r3::gentoo
dev-build/autoconf:        2.72-r4::gentoo
dev-build/automake:        1.18.1::gentoo
dev-build/cmake:           4.1.2-r1::gentoo
dev-build/libtool:         2.5.4::gentoo
dev-build/make:            4.4.1-r101::gentoo
dev-build/meson:           1.9.1::gentoo
dev-lang/perl:             5.40.2::gentoo
dev-lang/python:           3.13.5_p1::gentoo, 3.14.0::gentoo
dev-lang/rust-bin:         1.89.0::gentoo
llvm-core/clang:           20.1.8::gentoo
llvm-core/llvm:            20.1.8::gentoo
sys-apps/baselayout:       2.18::gentoo
sys-apps/sandbox:          2.46::gentoo
sys-apps/systemd:          257.9::gentoo
sys-devel/binutils:        2.45-r1::gentoo
sys-devel/binutils-config: 5.5.2::gentoo
sys-devel/gcc:             14.3.1_p20250801::gentoo
sys-devel/gcc-config:      2.12.1::gentoo
sys-kernel/linux-headers:  6.12::gentoo (virtual/os-headers)
sys-libs/glibc:            2.41-r6::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 3
    sync-rsync-verify-metamanifest: yes

Binary Repositories:

gentoobinhost
    priority: 9999
    sync-uri: https://distfiles.gentoo.org/releases/amd64/binpackages/23.0/x86-64

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live candy clean-logs config-protect-if-modified distlocks ebuild-locks export-pms-vars fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news nodoc noinfo noman parallel-fetch parallel-install pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="https://gentoo-mirror.alexxy.name/     https://distfiles.gentoo.org/     http://gentoo-mirror.alexxy.name/     http://mirror.mephi.ru/gentoo-distfiles/     ftp://mirror.mephi.ru/gentoo-distfiles/     rsync://mirror.mephi.ru/gentoo-distfiles/"
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
MAKEOPTS="-j6"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="X a52 aac acl acpi alsa amd64 avif bash-completion bios branding bzip2 cairo cet crypt dbus dri dts egl encode exif ffmpeg flac gdbm gif gtk gtk2 gtk3 gtk4 gui iconv icu introspection ipv6 jpeg jpegxl lcms libnotify libtirpc mad mate minimal mng mp3 mp4 mpeg multilib ncurses nls ogg opengl openmp pam pango pcre pdf png policykit ppds pulseaudio qml readline sdl seccomp sound ssl startup-notification svg systemd test-rust tiff truetype udev udisks unicode upower usb vorbis webp wxwidgets x264 xattr xcb xft xml xv xvid zlib zstd" ABI_X86="64" ADA_TARGET="gcc_14" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx pclmul popcnt sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" GUILE_SINGLE_TARGET="3-0" GUILE_TARGETS="3-0" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LLVM_TARGETS="X86" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-3" POSTGRES_TARGETS="postgres17" PYTHON_SINGLE_TARGET="python3_13" PYTHON_TARGETS="python3_13" RUBY_TARGETS="ruby32 ruby33" VIDEO_CARDS="intel radeon r600" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

The output of " emerge -pqv '=sys-libs/pam-1.7.1-r2::gentoo' ":

Code: Select all

[ebuild     U ] sys-libs/pam-1.7.1-r2 [1.7.1-r1] USE="systemd -audit -berkdb -debug (-elogind) -examples -nis -nls* (-selinux) -verify-sig (-filecaps%*)" ABI_X86="(64) -32 (-x32)"

And the end of the build file where the error is:

Code: Select all

[123/443] x86_64-pc-linux-gnu-gcc  -o modules/pam_nologin/pam_nologin.so modules/pam_nologin/pam_nologin.so.p/pam_nologin.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -Wl,--fatal-warnings -Wl,-O1 -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--undefined-version '-Wl,-rpath,$ORIGIN/../../libpam' -Wl,--start-group libpam_internal/libpam_internal.a libpam/libpam.so.0.85.1 -Wl,--end-group -Wl,--version-script=/var/tmp/portage/sys-libs/pam-1.7.1-r2/work/Linux-PAM-1.7.1/modules/modules.map
[124/443] x86_64-pc-linux-gnu-gcc  -o modules/pam_pwhistory/pam_pwhistory.so modules/pam_pwhistory/pam_pwhistory.so.p/pam_pwhistory.c.o modules/pam_pwhistory/pam_pwhistory.so.p/opasswd.c.o modules/pam_pwhistory/pam_pwhistory.so.p/pwhistory_config.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -Wl,--fatal-warnings -Wl,-O1 -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--undefined-version '-Wl,-rpath,$ORIGIN/../../libpam' -Wl,--start-group libpam_internal/libpam_internal.a libpam/libpam.so.0.85.1 -Wl,--version-script=/var/tmp/portage/sys-libs/pam-1.7.1-r2/work/Linux-PAM-1.7.1/modules/modules.map /usr/lib/libcrypt.so -Wl,--end-group
FAILED: [code=1] modules/pam_pwhistory/pam_pwhistory.so 
x86_64-pc-linux-gnu-gcc  -o modules/pam_pwhistory/pam_pwhistory.so modules/pam_pwhistory/pam_pwhistory.so.p/pam_pwhistory.c.o modules/pam_pwhistory/pam_pwhistory.so.p/opasswd.c.o modules/pam_pwhistory/pam_pwhistory.so.p/pwhistory_config.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -Wl,--fatal-warnings -Wl,-O1 -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--undefined-version '-Wl,-rpath,$ORIGIN/../../libpam' -Wl,--start-group libpam_internal/libpam_internal.a libpam/libpam.so.0.85.1 -Wl,--version-script=/var/tmp/portage/sys-libs/pam-1.7.1-r2/work/Linux-PAM-1.7.1/modules/modules.map /usr/lib/libcrypt.so -Wl,--end-group
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/libcrypt.so: error adding symbols: file in wrong format
collect2: error: ld returned 1 exit status
[125/443] x86_64-pc-linux-gnu-gcc  -o modules/pam_permit/pam_permit.so modules/pam_permit/pam_permit.so.p/pam_permit.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -Wl,--fatal-warnings -Wl,-O1 -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--undefined-version '-Wl,-rpath,$ORIGIN/../../libpam' -Wl,--start-group libpam_internal/libpam_internal.a libpam/libpam.so.0.85.1 -Wl,--end-group -Wl,--version-script=/var/tmp/portage/sys-libs/pam-1.7.1-r2/work/Linux-PAM-1.7.1/modules/modules.map
[126/443] x86_64-pc-linux-gnu-gcc -Idoc/specs/padout.p -Idoc/specs -I../Linux-PAM-1.7.1/doc/specs -Ilibpam/include -I../Linux-PAM-1.7.1/libpam/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -march=native -O2 -pipe -fPIE -Wno-unused-function -Wno-sign-compare -MD -MQ doc/specs/padout.p/meson-generated_.._parse_y.c.o -MF doc/specs/padout.p/meson-generated_.._parse_y.c.o.d -o doc/specs/padout.p/meson-generated_.._parse_y.c.o -c doc/specs/parse_y.c
[127/443] x86_64-pc-linux-gnu-gcc  -o modules/pam_rhosts/pam_rhosts.so modules/pam_rhosts/pam_rhosts.so.p/pam_rhosts.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -Wl,--fatal-warnings -Wl,-O1 -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--undefined-version '-Wl,-rpath,$ORIGIN/../../libpam' -Wl,--start-group libpam_internal/libpam_internal.a libpam/libpam.so.0.85.1 -Wl,--end-group -Wl,--version-script=/var/tmp/portage/sys-libs/pam-1.7.1-r2/work/Linux-PAM-1.7.1/modules/modules.map
[128/443] x86_64-pc-linux-gnu-gcc -Imodules/pam_xauth/pam_xauth.so.p -Imodules/pam_xauth -I../Linux-PAM-1.7.1/modules/pam_xauth -I../Linux-PAM-1.7.1/libpam_internal/include -Ilibpam/include -I../Linux-PAM-1.7.1/libpam/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -U_FILE_OFFSET_BITS -Wbad-function-cast -Wcast-align -Wcast-align=strict -Wcast-qual -Wdeprecated -Wformat=2 -Winit-self -Wmain -Wmissing-declarations -Wmissing-format-attribute -Wmissing-prototypes -Wnull-dereference -Wpointer-arith -Wreturn-type -Wshadow -Wstrict-prototypes -Wundef -Wuninitialized -Wunused -Wwrite-strings -march=native -O2 -pipe -fPIC -MD -MQ modules/pam_xauth/pam_xauth.so.p/pam_xauth.c.o -MF modules/pam_xauth/pam_xauth.so.p/pam_xauth.c.o.d -o modules/pam_xauth/pam_xauth.so.p/pam_xauth.c.o -c ../Linux-PAM-1.7.1/modules/pam_xauth/pam_xauth.c
[129/443] x86_64-pc-linux-gnu-gcc -Idoc/specs/padout.p -Idoc/specs -I../Linux-PAM-1.7.1/doc/specs -Ilibpam/include -I../Linux-PAM-1.7.1/libpam/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -march=native -O2 -pipe -fPIE -Wno-unused-function -Wno-sign-compare -MD -MQ doc/specs/padout.p/meson-generated_.._parse_l.c.o -MF doc/specs/padout.p/meson-generated_.._parse_l.c.o.d -o doc/specs/padout.p/meson-generated_.._parse_l.c.o -c doc/specs/parse_l.c
ninja: build stopped: subcommand failed.
 * ERROR: sys-libs/pam-1.7.1-r2::gentoo failed (compile phase):
 *   ninja -v -l0 -j6 failed
 * 
 * Call stack:
 *     ebuild.sh, line  143:  Called src_compile
 *   environment, line 3278:  Called meson-multilib_src_compile
 *   environment, line 1997:  Called multilib-minimal_src_compile
 *   environment, line 2191:  Called multilib_foreach_abi 'multilib-minimal_abi_src_compile'
 *   environment, line 2458:  Called multibuild_foreach_variant '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_compile'
 *   environment, line 2151:  Called _multibuild_run '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_compile'
 *   environment, line 2149:  Called _multilib_multibuild_wrapper 'multilib-minimal_abi_src_compile'
 *   environment, line  473:  Called multilib-minimal_abi_src_compile
 *   environment, line 2185:  Called multilib_src_compile
 *   environment, line 2678:  Called meson_src_compile
 *   environment, line 2064:  Called eninja
 *   environment, line 1486:  Called die
 * The specific snippet of code:
 *       "$@" || die -n "${*} failed"
 * 
 * If you need support, post the output of `emerge --info '=sys-libs/pam-1.7.1-r2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sys-libs/pam-1.7.1-r2::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sys-libs/pam-1.7.1-r2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sys-libs/pam-1.7.1-r2/temp/environment'.
 * Working directory: '/var/tmp/portage/sys-libs/pam-1.7.1-r2/work/Linux-PAM-1.7.1-abi_x86_64.amd64'
 * S: '/var/tmp/portage/sys-libs/pam-1.7.1-r2/work/Linux-PAM-1.7.1'

I was trying to update PAM as a part of @world, after the commands emerge --sync and emerge -avuDN @world.

grknight · Post by **grknight** » Thu Nov 13, 2025 4:09 pm

Please show the output of ls -l /usr/lib*/libcrypt.so*

We also need the entire build.log put on a paste service somewhere as this is a multilib issue.

Also, was this machine ever set to a no-multilib profile? (Not suggesting to select one, just to know for reference.)

DenyAllow · Post by **DenyAllow** » Thu Nov 13, 2025 4:33 pm

grknight wrote:Please show the output of ls -l /usr/lib*/libcrypt.so*

We also need the entire build.log put on a paste service somewhere as this is a multilib issue.

Also, was this machine ever set to a no-multilib profile? (Not suggesting to select one, just to know for reference.)

The output of the command:

Code: Select all

lrwxrwxrwx 1 root root     17 Nov 13 18:32 /usr/lib64/libcrypt.so -> libcrypt.so.2.0.0
lrwxrwxrwx 1 root root     17 Nov 13 18:32 /usr/lib64/libcrypt.so.1 -> libcrypt.so.1.1.0
-rwxr-xr-x 1 root root 202616 Nov 13 18:32 /usr/lib64/libcrypt.so.1.1.0
lrwxrwxrwx 1 root root     17 Nov 13 18:32 /usr/lib64/libcrypt.so.2 -> libcrypt.so.2.0.0
-rwxr-xr-x 1 root root 198520 Nov 13 18:32 /usr/lib64/libcrypt.so.2.0.0
lrwxrwxrwx 1 root root     17 Nov 13 18:32 /usr/lib/libcrypt.so -> libcrypt.so.2.0.0
lrwxrwxrwx 1 root root     17 Nov 13 18:32 /usr/lib/libcrypt.so.1 -> libcrypt.so.1.1.0
-rwxr-xr-x 1 root root 214320 Nov 13 18:32 /usr/lib/libcrypt.so.1.1.0
lrwxrwxrwx 1 root root     17 Nov 13 18:32 /usr/lib/libcrypt.so.2 -> libcrypt.so.2.0.0
-rwxr-xr-x 1 root root 214320 Nov 13 18:32 /usr/lib/libcrypt.so.2.0.0
-rwxr-xr-x 1 root root 214320 Nov 13 17:59 /usr/lib/libcrypt.so.2.0.0.bak
lrwxrwxrwx 1 root root     17 Nov 13 17:59 /usr/lib/libcrypt.so.2.bak -> libcrypt.so.2.0.0
lrwxrwxrwx 1 root root     17 Nov 13 17:59 /usr/lib/libcrypt.so.bak -> libcrypt.so.2.0.0

I've never set this system to no-multilib profile. And the entire build log on Pastebin: https://pastebin.com/w2RfQX9A

grknight · Post by **grknight** » Sun Mar 22, 2026 7:59 pm

As discussed in [topic=1177133]ERROR: sys-libs/pam-1.7.2::gentoo failed (compile phase)[/topic] recently, this looks like PKG_CONFIG_PATH may be set to a value that is incorrect.
emerge --info --verbose may show this value but should not be set at all if it is.