logical_guy
Apprentice
Joined: 18 Sep 2007
Posts: 268
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 Posted: Tue Apr 02, 2013 11:33 am Post subject: emerge sci-libs/vtk hangs indefinitely |
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Hi, I've been trying to emerge sci-libs/vtk-5.10.1 all afternoon and it goes only so far into its configuration and then just waits forever.
PLEASE HELP!!
I tried emerge --debug, but it did not give me any useful info as it is ineffective when the cmake files are being processed. Here are the last few lines of the emerge output:
| Code: | -- Checking ANSI streams end-of-file bug level
-- Checking ANSI streams end-of-file bug level - 1
-- Checking if ostream supports long long
-- Checking if ostream supports long long -- yes
-- Checking if istream supports long long
-- Checking if istream supports long long -- yes
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7")
-- Found HDF5: debug;/usr/lib64/libhdf5_hl.so;debug;/usr/lib64/libhdf5.so;debug;/usr/lib64/libsz.so;debug;/usr/lib64/libz.so;debug;/usr/lib64/librt.so;debug;/usr/lib64/libm.so;optimized;/usr/lib64/libhdf5_hl.so;optimized;/usr/lib64/libhdf5.so;optimized;/usr/lib64/libsz.so;optimized;/usr/lib64/libz.so;optimized;/usr/lib64/librt.so;optimized;/usr/lib64/libm.so
-- Found JPEG: /usr/lib64/libjpeg.so
-- Found PNG: /usr/lib64/libpng.so (found version "1.5.13")
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.0.2")
-- Found EXPAT: /usr/lib64/libexpat.so (found version "2.1.0")
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.0")
-- Found OGGTHEORA: /usr/lib64/libogg.so
-- Found OpenGL: /usr/lib64/libGL.so
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Here is my emerge --info:
| Code: |
# emerge --info
Portage 2.1.11.55 (default/linux/amd64/13.0/desktop, gcc-4.6.3, glibc-2.15-r3, 3.7.10-gentoo x86_64)
=================================================================
System uname: Linux-3.7.10-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.1
KiB Mem: 8089420 total, 6079832 free
KiB Swap: 4194300 total, 4194300 free
Timestamp of tree: Tue, 02 Apr 2013 06:15:01 +0000
ld GNU ld (GNU Binutils) 2.22
app-shells/bash: 4.2_p37
dev-java/java-config: 2.1.12-r1
dev-lang/python: 2.7.3-r3, 3.2.3-r2, 3.3.0-r1
dev-util/cmake: 2.8.9
dev-util/pkgconfig: 0.28
sys-apps/baselayout: 2.1-r1
sys-apps/openrc: 0.11.8
sys-apps/sandbox: 2.5
sys-devel/autoconf: 2.13, 2.69
sys-devel/automake: 1.9.6-r3, 1.11.6
sys-devel/binutils: 2.22-r1
sys-devel/gcc: 4.6.3
sys-devel/gcc-config: 1.7.3
sys-devel/libtool: 2.4-r1
sys-devel/make: 3.82-r4
sys-kernel/linux-headers: 3.7 (virtual/os-headers)
sys-libs/glibc: 2.15-r3
Repositories: gentoo gamerlay sunrise gentoo-haskell science ezod mistafunk
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -mno-avx"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions"
CONFIG_PROTECT_MASK="${EPREFIX}/etc/gconf /etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe -mno-avx"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.swin.edu.au/gentoo http://gentoo.mirrors.tera-byte.com/"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j7"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/gamerlay /var/lib/layman/sunrise /var/lib/layman/haskell /var/lib/layman/science /var/lib/layman/ezod /var/lib/layman/mistafunk"
SYNC="rsync://rsync1.au.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X a52 aac acl acpi alsa amd64 bash-completion beagle berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dga dri dts dvd dvdr dvdread emboss encode exif fam ffmpeg firefox flac fortran gdbm gif gpm gstreamer gtk iconv ipv6 java jpeg lcms ldap libnotify lm_sensors mad mmx mng modules mono mp3 mp4 mpeg mudflap multilib ncurses nls nptl nsplugin ogg openal opengl openmp pam pango pcre pdf png pnm policykit ppds qt3-support qt3support qt4 quicktime readline sdl session spell sse sse2 ssl ssse3 startup-notification svg tcpd thinkpad threads tiff truetype udev udisks unicode upower usb v4l v4l2 vaapi vim-syntax vorbis wifi wxwidgets x264 xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="evdev synaptics keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB hi" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2 python3_3" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="intel v4l vesa fbdev" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON |
I also tried running it inside strace. I must admit I have no idea what was going on with all those system calls, but right at the end it seems to hang at some futex call (here are the last few lines of the output):
| Code: | [pid 19708] open("/usr/local/lib/libresolv.so.2", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
[pid 19708] open("/opt/sun-jdk-1.6.0.43/jre/lib/amd64/libresolv.so.2", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
[pid 19708] open("/opt/sun-jdk-1.6.0.43/jre/lib/amd64/native_threads/libresolv.so.2", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
[pid 19708] open("/opt/sun-jdk-1.6.0.43/jre/lib/amd64/xawt/libresolv.so.2", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
[pid 19708] open("/opt/sun-jdk-1.6.0.43/jre/lib/amd64/server/libresolv.so.2", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
[pid 19708] open("/lib64/libresolv.so.2", O_RDONLY|O_CLOEXEC) = 3
[pid 19708] read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\260@\0\0\0\0\0\0"..., 832) = 832
[pid 19708] fstat(3, {st_mode=S_IFREG|0755, st_size=84624, ...}) = 0
[pid 19708] mmap(NULL, 2189960, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f34b5c56000
[pid 19708] mprotect(0x7f34b5c69000, 2097152, PROT_NONE) = 0
[pid 19708] mmap(0x7f34b5e69000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x13000) = 0x7f34b5e69000
[pid 19708] mmap(0x7f34b5e6b000, 6792, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f34b5e6b000
[pid 19708] close(3) = 0
[pid 19708] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f34b8179000
[pid 19708] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f34b8178000
[pid 19708] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f34b8177000
[pid 19708] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f34b8176000
[pid 19708] arch_prctl(ARCH_SET_FS, 0x7f34b8177700) = 0
[pid 19708] mprotect(0x7f34b78ed000, 16384, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b5e69000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b6081000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b754a000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b6d22000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b63dd000, 32768, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b65f4000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b67fe000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b6a2b000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b6f25000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b713b000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b7b0e000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b7346000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b7d80000, 16384, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b7f98000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x603000, 4096, PROT_READ) = 0
[pid 19708] mprotect(0x7f34b81bd000, 4096, PROT_READ) = 0
[pid 19708] munmap(0x7f34b817f000, 246848) = 0
[pid 19708] set_tid_address(0x7f34b81779d0) = 19708
[pid 19708] set_robust_list(0x7f34b81779e0, 24) = 0
[pid 19708] futex(0x7ffff96897bc, FUTEX_WAKE_PRIVATE, 1) = 0
[pid 19708] futex(0x7ffff96897bc, FUTEX_WAIT_BITSET_PRIVATE|FUTEX_CLOCK_REALTIME, 1, NULL, 7f34b8177700) = -1 EAGAIN (Resource temporarily unavailable)
[pid 19708] rt_sigaction(SIGRTMIN, {0x7f34b78fd730, [], SA_RESTORER|SA_SIGINFO, 0x7f34b7907460}, NULL, 8) = 0
[pid 19708] rt_sigaction(SIGRT_1, {0x7f34b78fd7c0, [], SA_RESTORER|SA_RESTART|SA_SIGINFO, 0x7f34b7907460}, NULL, 8) = 0
[pid 19708] rt_sigprocmask(SIG_UNBLOCK, [RTMIN RT_1], NULL, 8) = 0
[pid 19708] getrlimit(RLIMIT_STACK, {rlim_cur=8192*1024, rlim_max=RLIM64_INFINITY}) = 0
[pid 19708] stat("/proc/self/status", {st_mode=S_IFREG|0444, st_size=0, ...}) = 0
[pid 19708] futex(0x7f34b754b0e0, FUTEX_WAKE_PRIVATE, 2147483647) = 0
[pid 19708] futex(0x7f34b7f993c0, FUTEX_WAIT_PRIVATE, 2, NULL |
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Portage & Programming
