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sbdmmg
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 Posted: Mon Mar 19, 2012 12:00 pm Post subject: sci-physics/root-5.32.01-r2 segv [solved] |
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Hello,
I am seeing a crash (since the update to 5.32.01-r2, with ~x86) when using root.
The crash seem to be related to the interplay of root and libAfterImage (media-libs/libafterimage-1.20).
I cannot reproduce the crash if I compile the same version of root on the same system but without portage (i.e. with configure && make && make install).
Here is one example of the crash:
| Code: |
$ root -l
root [0] TBrowser b
Warning in <TASImage::GetMask>: No image
Warning in <TASImage::GetMask>: No image
...
*** Break *** segmentation violation
...
The lines below might hint at the cause of the crash.
If they do not help you then please submit a bug report at
http://root.cern.ch/bugs. Please post the ENTIRE stack trace
from above as an attachment in addition to anything else
that might help us fixing this issue.
===========================================================
#12 0xb4f97685 in asimage_add_line_mono () from /usr/lib/libAfterImage.so.0
#13 0xb4fbb54e in encode_image_scanline_asim () from /usr/lib/libAfterImage.so.0
#14 0xb4fb93c0 in output_image_line_direct () from /usr/lib/libAfterImage.so.0
#15 0xb4fced9b in fill_asimage () from /usr/lib/libAfterImage.so.0
#16 0xb501f49f in TASImage::FillRectangleInternal(unsigned int, int, int, unsigned int, unsigned int) () from /usr/lib/root/libASImage.so
#17 0xb501f625 in TASImage::FillRectangle(char const*, int, int, unsigned int, unsigned int) () from /usr/lib/root/libASImage.so
#18 0xb5242afe in TGPictureButton::CreateDisabledPicture() () from /usr/lib/root/libGui.so
#19 0xb5244684 in TGPictureButton::DoRedraw() () from /usr/lib/root/libGui.so
#20 0xb523f86c in TGButton::SetState(EButtonState, bool) () from /usr/lib/root/libGui.so
#21 0xb52b5284 in TGTextEditor::Build() () from /usr/lib/root/libGui.so
#22 0xb52b6968 in TGTextEditor::TGTextEditor(char const*, TGWindow const*, unsigned int, unsigned int) () from /usr/lib/root/libGui.so
#23 0xb55978f2 in ?? () from /usr/lib/root/libGui.so
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My configuration/setup is below (see [1], [2]).
I've tried the usual sanity checks (running revdep-rebuild etc.), without any luck.
Could you please advise me on how to debug/fix this?
Many thanks,
davide
[1] system configuration
--------------------------------
$ emerge --info
Portage 2.1.10.44 (default/linux/x86/10.0, gcc-4.5.3, glibc-2.13-r4, 3.1.6-gentoo i686)
=================================================================
System uname: Linux-3.1.6-gentoo-i686-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.0.3
Timestamp of tree: Sat, 17 Mar 2012 12:45:01 +0000
app-shells/bash: 4.2_p20
dev-java/java-config: 2.1.11-r3
dev-lang/python: 2.7.2-r3, 3.1.4-r3, 3.2.2
dev-util/cmake: 2.8.6-r4
dev-util/pkgconfig: 0.26
sys-apps/baselayout: 2.0.3
sys-apps/openrc: 0.9.8.4
sys-apps/sandbox: 2.5
sys-devel/autoconf: 2.13, 2.68
sys-devel/automake: 1.9.6-r3, 1.11.1
sys-devel/binutils: 2.21.1-r1
sys-devel/gcc: 4.5.3-r2
sys-devel/gcc-config: 1.5-r2
sys-devel/libtool: 2.4-r1
sys-devel/make: 3.82-r1
sys-kernel/linux-headers: 3.1 (virtual/os-headers)
sys-libs/glibc: 2.13-r4
Repositories: gentoo zugaina dev-zero
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://mirror.mcs.anl.gov/pub/gentoo/ rsync://mirror.mcs.anl.gov/gentoo/ ftp://mirror.mcs.anl.gov/pub/gentoo/"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/zugaina /var/lib/layman/dev-zero"
SYNC="rsync://rsync.us.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa berkdb bzip2 cdr cli consolekit cracklib crypt cups cxx dbus divx dri dvd flac fortran gdbm gif gpm iconv id3 ipv6 kde lame midi modules mp3 mp4 mplayer mudflap ncurses nls nptl nptlonly ogg opengl openmp pam pcre policykit pppd qt3support qt4 readline realmedia session ssl svg sysfs tcpd udev unicode v4l v4l2 video webkit wmp x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
[2] root flags
--------------------------------------------
[ebuild R ~] sci-physics/root-5.32.01-r2 USE="X doc examples math ncurses opengl openmp python qt4 reflex ssl -afs -avahi -clarens -emacs -fftw -fits -graphviz -kerberos -ldap -mpi -mysql -odbc -oracle -postgres (-prefix) -pythia6 -pythia8 -ruby -xft -xinetd -xml -xrootd" 0 kB
Last edited by sbdmmg on Tue Apr 03, 2012 11:36 am; edited 1 time in total |
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Hypnos
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| Posted: Mon Mar 19, 2012 12:40 pm Post subject: |
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Does the crash still occur if you replace the libafterimage with x11-wm/afterstep (both satisfy the same requirement in the ebuild)?
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sbdmmg
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Joined: 01 Jul 2010
Posts: 34
Location: NJ, USA
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| Posted: Tue Mar 20, 2012 12:14 am Post subject: |
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Thanks for your suggestion, Hypnos.
I have modified the ebuild in the following way:
| Code: |
# diff /usr/local/portage/sci-physics/root//root-5.32.01-r2.ebuild*
47c47
< >=x11-wm/afterstep-2.2.11
---
> || ( >=media-libs/libafterimage-1.20 >=x11-wm/afterstep-2.2.11 )
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and removed media-libs/libafterimage (that at this point was conflicting with the required x11-wm/afterstep).
Unfortunately x11-wm/afterstep does not compile:
| Code: |
make[1]: Leaving directory `/var/tmp/portage/x11-wm/afterstep-2.2.11/work/AfterStep-2.2.11/src/ascp'
make[1]: Entering directory `/var/tmp/portage/x11-wm/afterstep-2.2.11/work/AfterStep-2.2.11/src/tools/ASRun'
i686-pc-linux-gnu-gcc -DNO_DEBUG_OUTPUT -O2 -march=i686 -pipe -Wall -fPIC -c main.c
make[1]: *** No rule to make target `../../../libASGTK/libASGTK.so', needed by `ASRun'. Stop.
make[1]: Leaving directory `/var/tmp/portage/x11-wm/afterstep-2.2.11/work/AfterStep-2.2.11/src/tools/ASRun'
make: *** [all] Error 1
* ERROR: x11-wm/afterstep-2.2.11 failed (compile phase):
* emake failed
*
* If you need support, post the output of 'emerge --info =x11-wm/afterstep-2.2.11',
* the complete build log and the output of 'emerge -pqv =x11-wm/afterstep-2.2.11'.
* The complete build log is located at '/var/tmp/portage/x11-wm/afterstep-2.2.11/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/x11-wm/afterstep-2.2.11/temp/environment'.
* S: '/var/tmp/portage/x11-wm/afterstep-2.2.11/work/AfterStep-2.2.11'
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Any idea about what could be the reason? (the full build log is here: http://pastebin.com/2EpPN3Xg)
Many thanks,
davide |
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Hypnos
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Posts: 2889
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| Posted: Tue Mar 20, 2012 4:08 am Post subject: |
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That message comes when the GTK USE flag is disabled.
In version 2.2.9 (stable keyword), the message does not cause a build failure (pastebin)
In version 2.2.11 (testing keyword), it does cause a build failure (pastebin)
This looks like a bug ...
If your immediate goal is to get root working, try afterstep-2.2.9.
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sbdmmg
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Location: NJ, USA
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| Posted: Tue Mar 20, 2012 9:53 am Post subject: |
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Thanks again for your suggestion, Hypnos.
I tried to use x11-wm/afterstep-2.2.9, but now I get an error when building root:
| Code: |
Checking for source directory ... bin/rmkdepend -R -fbindings/pyroot/src/TPySelector.d -Y -w 1000 -- -pipe -m32 -Wall -W -Woverloaded-virtual -fPIC -Iinclude -DR__HAVE_CONFIG -pthread -I/usr/include/python2.7 -fno-strict-aliasing -D__cplusplus -- /var/tmp/portage/sci-physics/root-5.32.01-r2/work/root/bindings/pyroot/src/TPySelector.cxx
/var/tmp/portage/sci-physics/root-5.32.01-r2/work/root
i686-pc-linux-gnu-g++ -O2 -march=i686 -pipe -pipe -m32 -Wall -W -Woverloaded-virtual -fPIC -Iinclude -DR__HAVE_CONFIG -pthread -I/usr/include/python2.7 -fno-strict-aliasing -o bindings/pyroot/src/TPySelector.o -c /var/tmp/portage/sci-physics/root-5.32.01-r2/work/root/bindings/pyroot/src/TPySelector.cxx
Configuring for linux
Invalid option '--with-ttf'. Try ./configure --help
make: *** [graf2d/asimage/src/libAfterImage/Makefile] Error 1
make: *** Waiting for unfinished jobs....
* ERROR: sci-physics/root-5.32.01-r2 failed (compile phase):
* emake failed
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After a little bit more googling around, I see that this type of issue has happened already in the past:
https://bugs.gentoo.org/show_bug.cgi?id=252918
https://savannah.cern.ch/bugs/?func=detailitem&item_id=30944
and it seems to be related to the fact that root is shipping its own version of libafterimage.
Should I report a bug ? (although this is ~x86 ...).
Many thanks,
davide |
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Hypnos
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sbdmmg
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sbdmmg
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| Posted: Tue Apr 03, 2012 11:35 am Post subject: |
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| Just in case anyone else runs into the same problem: this issue has been fixed in root-5.32.02-r1 (see details in the above-linked bug report). |
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