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philoo
n00b
Joined: 16 Jul 2008
Posts: 37
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 Posted: Mon Sep 25, 2023 1:41 pm Post subject: [ERASED] System seems broken - emerge is KO |
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Hi everybody,
I have some kind of problem with my Gentoo 2023, installed in july/august 2023 inside a VM with VirtualBox.
All my VMs (Linux: Fedora 38, Xubuntu 22.04, Kali, Manjaro, OpenMandriva, OpenSuse, Yunohost, etc. / Windows: Se7en, 10 / MacOS Catalina) are installed in a 4 TB SSD SATA 6 Gb (Samsung 870 EVO) which have 441 bad sectors.
My Host OS is a Xubuntu 22.04.2.
All everything working good until last saurtday when I tried to update my system.
First, I didn't take very importance to this message, but when I started the VM, there was an error/ problem message about USB.
This is approx. the error message
Can't enumerate host usb devices
But, the VM startd well, and after the boot, and reached the Desktop (XFCE4), I ran the Terminal, I searched for updates.
I remember there was 54 packages to update/upgrade or rebuild, and then with the last few packages, something went wrong: the VM totally freeze.
No operation was pemitted inside the VM at this time: so, I have to stop the VM brutally (with Close or Shutdown in VirtualBox menu).
I restarted the VM, retried updates operation: the only packages to updates was Thunderbird 10x.x.x, I can't remember exactly.
as soon as tried to ran update thunderbird with
I have an error message message about ahci0 and the VM freeze again.
If I tried to clone the VBOX HDD, I have an error message was someting like that:
| Code: | VERR_DEV_IO_ERROR
Result Code: VBOX_E_FILE_ERROR (0x80BB0004)
Component: Machine
Interface: IMachine {00aa9000-xxxx-yyyy-zzzz-0000000f0000} |
Note: https://forums.virtualbox.org/viewtopic.php?t=63860
- the VM run (except for update/upgrade process)
- VM use snapshot
- the cloning start, but fail
- I can copy files (.vmdk) from the host SSD in the host OS
OK, again I brutally stop the VM, tick the Use the host I/O cache setting and error message gone.
But: by default, when I set VM, I already tick this setting with the use of Controller:SATA setting.
How could it be unticked?
Then, again, I boot the Gentoo VM, well, no problem, and tried update packages.
Here, I got an error with read-only filesystem, something like this:
| Code: | | [Errno 30] Read-only filesystem: b'/var/tmp/portage/mail-client/thunderbird-102.15.1/ |
After some searches on the Web, I decided to modify the
file, which it didn't succeed, because read-only filesystem
After some tries, but not very important, and some reboots, I looked into logs for needed infos, and dmesg returns this:
| Code: | [ 344.788303] ata2.00: configured for UDMA/133
[ 344.788314] ata2: EH complete
[ 344.834473] ata2.00: exception Emask 0x0 SAct 0x0 SErr 0x0 action 0x0
[ 344.834481] ata2.00: irq_stat 0x40000000
[ 344.834484] ata2.00: failed command: WRITE DMA
[ 344.834486] ata2.00: cmd ca/00:60:28:e0:f1/00:00:00:00:00/e4 tag 12 dma 49152 out
res 41/10:60:28:e0:f1/00:00:00:00:00/e4 Emask 0x81 (invalid argument)
[ 344.834493] ata2.00: status: { DRDY ERR }
[ 344.834495] ata2.00: error: { IDNF }
[ 344.834661] ata2.00: Security Log not supported
[ 344.834973] ata2.00: Security Log not supported
[ 344.834978] ata2.00: configured for UDMA/133
[ 344.834987] ata2: EH complete
[ 344.884559] ata2.00: exception Emask 0x0 SAct 0x0 SErr 0x0 action 0x0
[ 344.884564] ata2.00: irq_stat 0x40000000
[ 344.884567] ata2.00: failed command: WRITE DMA EXT
[ 344.884568] ata2.00: cmd 35/00:40:90:e0:f1/00:05:04:00:00/e0 tag 3 dma 688128 out
res 41/10:40:90:e0:f1/00:05:04:00:00/e0 Emask 0x81 (invalid argument)
[ 344.884573] ata2.00: status: { DRDY ERR }
[ 344.884575] ata2.00: error: { IDNF }
[ 344.884741] ata2.00: Security Log not supported
[ 344.885029] ata2.00: Security Log not supported
[ 344.885033] ata2.00: configured for UDMA/133
[ 344.885041] ata2: EH complete
[ 344.927875] ata2.00: exception Emask 0x0 SAct 0x0 SErr 0x0 action 0x0
[ 344.927880] ata2.00: irq_stat 0x40000000
[ 344.927883] ata2.00: failed command: WRITE DMA
[ 344.927884] ata2.00: cmd ca/00:60:28:e0:f1/00:00:00:00:00/e4 tag 20 dma 49152 out
res 41/10:60:28:e0:f1/00:00:00:00:00/e4 Emask 0x81 (invalid argument)
[ 344.927890] ata2.00: status: { DRDY ERR }
[ 344.927892] ata2.00: error: { IDNF }
[ 344.928047] ata2.00: Security Log not supported
[ 344.928310] ata2.00: Security Log not supported
[ 344.928314] ata2.00: configured for UDMA/133
[ 344.928325] sd 1:0:0:0: [sda] tag#20 FAILED Result: hostbyte=DID_OK driverbyte=DRIVER_OK cmd_age=0s
[ 344.928328] sd 1:0:0:0: [sda] tag#20 Sense Key : Illegal Request [current]
[ 344.928330] sd 1:0:0:0: [sda] tag#20 Add. Sense: Logical block address out of range
[ 344.928332] sd 1:0:0:0: [sda] tag#20 CDB: Write(10) 2a 00 04 f1 e0 28 00 00 60 00
[ 344.928333] I/O error, dev sda, sector 82960424 op 0x1:(WRITE) flags 0x800 phys_seg 12 prio class 2
[ 344.928347] ata2: EH complete
[ 344.975631] ata2.00: exception Emask 0x0 SAct 0x0 SErr 0x0 action 0x0
[ 344.975639] ata2.00: irq_stat 0x40000000
[ 344.975643] ata2.00: failed command: WRITE DMA EXT
[ 344.975645] ata2.00: cmd 35/00:40:90:e0:f1/00:05:04:00:00/e0 tag 11 dma 688128 out
res 41/10:40:90:e0:f1/00:05:04:00:00/e0 Emask 0x81 (invalid argument)
[ 344.975653] ata2.00: status: { DRDY ERR }
[ 344.975655] ata2.00: error: { IDNF }
[ 344.975828] ata2.00: Security Log not supported
[ 344.976027] ata2.00: Security Log not supported
[ 344.976031] ata2.00: configured for UDMA/133
[ 344.976050] sd 1:0:0:0: [sda] tag#11 FAILED Result: hostbyte=DID_OK driverbyte=DRIVER_OK cmd_age=0s
[ 344.976053] sd 1:0:0:0: [sda] tag#11 Sense Key : Illegal Request [current]
[ 344.976057] sd 1:0:0:0: [sda] tag#11 Add. Sense: Logical block address out of range
[ 344.976059] sd 1:0:0:0: [sda] tag#11 CDB: Write(10) 2a 00 04 f1 e0 90 00 05 40 00
[ 344.976060] I/O error, dev sda, sector 82960528 op 0x1:(WRITE) flags 0x4800 phys_seg 168 prio class 2
[ 344.976111] ata2: EH complete
[ 344.977731] Aborting journal on device sda3-8.
[ 344.984259] EXT4-fs error (device sda3): ext4_journal_check_start:83: comm systemd-journal: Detected aborted journal
[ 344.984560] EXT4-fs error (device sda3): ext4_journal_check_start:83: comm python3.11: Detected aborted journal
[ 344.984650] EXT4-fs (sda3): Remounting filesystem read-only |
Seem I have trouble with the VBOX HARDDISK...
Note 1: at every boot, I had a fsck running on the root partition (formate in EXT4 FS).
Note 2: when I rebooted the VM, root FS was OK (not read-only) and became read-only when I tried to process updates/upgrades.
This is not the end: I have something to do for my work, I'll come back soon and continue in the next post
Last edited by philoo on Tue Oct 03, 2023 5:55 am; edited 2 times in total |
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philoo
n00b
Joined: 16 Jul 2008
Posts: 37
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| Posted: Mon Sep 25, 2023 1:43 pm Post subject: |
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(more)
After that, I booted VM with the Gentoo LiveGUI DVD to check the FS.
For fully comprehension, here is some infos:
fdisk
| Code: | fdisk -l /dev/sda
Disque /dev/sda : 75 GiB, 80530636800 octets, 157286400 secteurs
Modèle de disque : VBOX HARDDISK
Unités : secteur de 1 × 512 = 512 octets
Taille de secteur (logique / physique) : 512 octets / 512 octets
taille d'E/S (minimale / optimale) : 512 octets / 512 octets
Type d'étiquette de disque : gpt
Identifiant de disque : 0B9B9044-1177-C044-A3FE-2B20EAE1A4A4
Périphérique Début Fin Secteurs Taille Type
/dev/sda1 2048 2099199 2097152 1G Système EFI
/dev/sda2 2099200 10487807 8388608 4G Partition d'échange Linux
/dev/sda3 10487808 157284351 146796544 70G Système de fichiers Linux
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fstab
| Code: | cat /etc/fstab
# /etc/fstab: static file system information.
#
(...)
#LABEL=boot /boot ext4 noauto,noatime 1 2
#UUID=58e72203-57d1-4497-81ad-97655bd56494 / ext4 noatime 0 1
#LABEL=swap none swap sw 0 0
#/dev/cdrom /mnt/cdrom auto noauto,ro 0 0
# /dev/sda3 LABEL=GENTOO
UUID=b534c437-2ea2-4989-8e25-c46e8f5e6bf1 / ext4 defaults,rw,relatime 0 1
# /dev/sda1 LABEL=ESP
UUID=D632-49CE /boot/EFI vfat rw,relatime,fmask=0022,dmask=0022,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro 0 2
/swap none swap defaults 0 0
|
So, i check the filesystem, here is the results
| Code: | fsck.ext4 -vf /dev/sda3
e2fsck 1.47.0 (5-Feb-2023)
GENTOO: recovering journal
Pass 1: Checking inodes, blocks, and sizes
Pass 2: Checking directory structure
Pass 3: Checking directory connectivity
Pass 4: Checking reference counts
Pass 5: Checking group summary information
Free blocks count wrong (9677428, counted=8983442).
Fix<y>? yes
Free inodes count wrong (3709041, counted=3489804).
Fix<y>? yes
GENTOO: ***** FILE SYSTEM WAS MODIFIED *****
1097716 inodes used (23.93%, out of 4587520)
1005 non-contiguous files (0.1%)
528 non-contiguous directories (0.0%)
# of inodes with ind/dind/tind blocks: 0/0/0
Extent depth histogram: 1076678/121
9366126 blocks used (51.04%, out of 18349568)
0 bad blocks
2 large files
994395 regular files
82159 directories
174 character device files
97 block device files
9 fifos
576 links
20872 symbolic links (20628 fast symbolic links)
1 socket
------------
1098283 files |
No bad blocks? really?
but, like this, with this command, I got this:
| Code: | fsck.ext4 -vfyc /dev/sda3
e2fsck 1.47.0 (5-Feb-2023)
Checking for bad blocks (read-only test): done
GENTOO: Updating bad block inode.
Pass 1: Checking inodes, blocks, and sizes
Running additional passes to resolve blocks claimed by more than one inode...
Pass 1B: Rescanning for multiply-claimed blocks
Multiply-claimed block(s) in inode 8: 9054708 9059089
Multiply-claimed block(s) in inode 4067821: 16292520
Multiply-claimed block(s) in inode 4202687: 16557592
Multiply-claimed block(s) in inode 4202764: 13712136
Multiply-claimed block(s) in inode 4202804: 16560349
Multiply-claimed block(s) in inode 4202819: 12301175
Multiply-claimed block(s) in inode 4217472: 11406485
Multiply-claimed block(s) in inode 4218068: 11408280
Multiply-claimed block(s) in inode 4218645: 5424355
Multiply-claimed block(s) in inode 4485087: 16150633
Multiply-claimed block(s) in inode 4502400: 12398600
Pass 1C: Scanning directories for inodes with multiply-claimed blocks
Pass 1D: Reconciling multiply-claimed blocks
(There are 10 inodes containing multiply-claimed blocks.)
File <The journal inode> (inode #8, mod time Sun Jul 16 07:35:05 2023)
has 2 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 9054708 (Input/output error). Ignore error? yes
Force rewrite? yes
Error reading block 9059089 (Input/output error). Ignore error? yes
Force rewrite? yes
File /var/tmp/portage/mail-client/thunderbird-102.15.1/work/thunderbird-102.15.1/intl/icu/source/data/unit/ro.txt (inode #4067821, mod time Tue Sep 12 11:00:06 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 16292520 (Input/output error). Ignore error? yes
Force rewrite? yes
File /usr/src/linux-6.1.53-gentoo-r1/drivers/gpu/drm/amd/include/asic_reg/dpcs/dpcs_4_2_3_sh_mask.h (inode #4202687, mod time Sat Sep 23 11:04:05 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 16557592 (Input/output error). Ignore error? yes
Force rewrite? yes
File /usr/src/linux-6.1.53-gentoo-r1/drivers/gpu/drm/amd/include/asic_reg/mmhub/mmhub_3_0_1_sh_mask.h (inode #4202764, mod time Sat Sep 23 11:04:06 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 13712136 (Input/output error). Ignore error? yes
Force rewrite? yes
File /usr/src/linux-6.1.53-gentoo-r1/drivers/gpu/drm/amd/include/asic_reg/nbio/nbio_2_3_sh_mask.h (inode #4202804, mod time Sat Sep 23 11:04:06 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 16560349 (Input/output error). Ignore error? yes
Force rewrite? yes
File /usr/src/linux-6.1.53-gentoo-r1/drivers/gpu/drm/amd/include/asic_reg/nbio/nbio_7_4_sh_mask.h (inode #4202819, mod time Sat Sep 23 11:04:06 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 12301175 (Input/output error). Ignore error? yes
Force rewrite? yes
File /usr/src/linux-6.1.53-gentoo-r1/drivers/net/ethernet/intel/ixgbe/ixgbe_fcoe.c (inode #4217472, mod time Sat Sep 23 11:04:09 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 11406485 (Input/output error). Ignore error? yes
Force rewrite? yes
File /usr/src/linux-6.1.53-gentoo-r1/drivers/net/ethernet/mellanox/mlxbf_gige/mlxbf_gige_rx.c (inode #4218068, mod time Sat Sep 23 11:04:09 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 11408280 (Input/output error). Ignore error? yes
Force rewrite? yes
File /usr/src/linux-6.1.53-gentoo-r1/drivers/net/ethernet/realtek/r8169_main.c (inode #4218645, mod time Sat Sep 23 11:04:09 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 5424355 (Input/output error). Ignore error? yes
Force rewrite? yes
File /var/tmp/portage/mail-client/thunderbird-102.15.1/work/thunderbird-102.15.1/dom/animation/test/testcommon.js (inode #4485087, mod time Tue Sep 12 11:00:04 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 16150633 (Input/output error). Ignore error? yes
Force rewrite? yes
File /var/tmp/portage/mail-client/thunderbird-102.15.1/work/thunderbird-102.15.1/third_party/rust/quote/src/lib.rs (inode #4502400, mod time Tue Sep 12 11:00:18 2023)
has 1 multiply-claimed block(s), shared with 1 file(s):
<The bad blocks inode> (inode #1, mod time Sun Sep 24 09:19:28 2023)
Clone multiply-claimed blocks? yes
Error reading block 12398600 (Input/output error). Ignore error? yes
Force rewrite? yes
Pass 2: Checking directory structure
Pass 3: Checking directory connectivity
Pass 4: Checking reference counts
Pass 5: Checking group summary information
Free blocks count wrong for group #0 (1584, counted=1572).
Fix? yes
Free blocks count wrong for group #165 (11297, counted=11298).
Fix? yes
Free blocks count wrong for group #276 (4294967294, counted=0).
Fix? yes
Free blocks count wrong for group #348 (69, counted=71).
Fix? yes
Free blocks count wrong for group #375 (24577, counted=24578).
Fix? yes
Free blocks count wrong for group #378 (7028, counted=7029).
Fix? yes
Free blocks count wrong for group #418 (4926, counted=4927).
Fix? yes
Free blocks count wrong for group #492 (3447, counted=3448).
Fix? yes
Free blocks count wrong for group #497 (3217, counted=3218).
Fix? yes
Free blocks count wrong for group #505 (857, counted=859).
Fix? yes
Error writing file system info: Input/output error
GENTOO: ***** FILE SYSTEM WAS MODIFIED ***** |
I thought it was enough to solve the issue; so, I rebooted my Gentoo VM into the Gentoo Guest OS...
but, when I tried to update/upgrade Gentoo, same thing: root (GENTOO) turned into read-only filesystem again.
Shutdown the Gentoo Guest OS, and booted the VM with Live DVD Xubuntu 22.04.
Check the badblocks (in french sorry):
| Code: | Vérification des blocs défectueux dans un mode non destructif de lecture-écriture
Du bloc 0 au bloc 78643199
Vérification des blocs défectueux (test non destructif de lecture-écriture)
Test en cours avec un motif aléatoire : 0.00% effectué, 0:02 écoulé. (0/0/0 erreurs) 0.62% effectué, 0:03 écoulé. (0/0/0 erreurs) 1.38% effectué, 0:04 écoulé. (0/0/0 erreurs) 2.25% effectué, 0:05 écoulé. (0/0/0 erreurs) 3.00% effectué, 0:06 écoulé. (0/0/0 erreurs) 3.75% effectué, 0:07 écoulé. (0/0/0 erreurs) 4.62% effectué, 0:08 écoulé. (0/0/0 erreurs) 5.38% effectué, 0:09 écoulé. (0/0/0 erreurs) 6.12% effectué, 0:10 écoulé. (0/0/0 erreurs) 6.75% effectué, 0:11 écoulé. (0/0/0 erreurs) 7.12% effectué, 0:12 écoulé. (0/0/0 erreurs) 7.38% effectué, 0:13 écoulé. (0/0/0 erreurs) 7.50% effectué, 0:24 écoulé. (0/0/0 erreurs) 8.00% effectué, 0:25 écoulé. (0/0/0 erreurs) 8.75% effectué, 0:26 écoulé. (0/0/0 erreurs) 9.38% effectué, 0:27 écoulé. (0/0/0 erreurs) 10.12% effectué, 0:28 écoulé. (0/0/0 erreurs) 10.75% effectué, 0:30 écoulé. (0/0/0 erreurs) 11.50% effectué, 0:31 écoulé. (0/0/0 erreurs) 12.00% effectué, 0:32 écoulé. (0/0/0 erreurs) 12.62% effectué, 0:33 écoulé. (0/0/0 erreurs) 13.25% effectué, 0:34 écoulé. (0/0/0 erreurs) 13.75% effectué, 0:35 écoulé. (0/0/0 erreurs) 13.75% effectué, 0:36 écoulé. (0/0/0 erreurs) 14.38% effectué, 0:37 écoulé. (0/0/0 erreurs) 14.88% effectué, 0:38 écoulé. (0/0/0 erreurs) 15.00% effectué, 0:39 écoulé. (0/0/0 erreurs) 15.38% effectué, 0:40 écoulé. (0/0/0 erreurs) 15.62% effectué, 0:52 écoulé. (0/0/0 erreurs) 16.25% effectué, 0:53 écoulé. (0/0/0 erreurs) 17.00% effectué, 0:54 écoulé. (0/0/0 erreurs) 17.62% effectué, 0:55 écoulé. (0/0/0 erreurs) 18.12% effectué, 0:56 écoulé. (0/0/0 erreurs) 18.50% effectué, 0:57 écoulé. (0/0/0 erreurs) 18.88% effectué, 0:58 écoulé. (0/0/0 erreurs) 19.25% effectué, 0:59 écoulé. (0/0/0 erreurs) 19.75% effectué, 1:00 écoulé. (0/0/0 erreurs) 20.25% effectué, 1:01 écoulé. (0/0/0 erreurs) 20.62% effectué, 1:02 écoulé. (0/0/0 erreurs) 21.12% effectué, 1:03 écoulé. (0/0/0 erreurs) 21.50% effectué, 1:04 écoulé. (0/0/0 erreurs) 21.88% effectué, 1:05 écoulé. (0/0/0 erreurs) 22.12% effectué, 1:07 écoulé. (0/0/0 erreurs) 22.25% effectué, 1:09 écoulé. (0/0/0 erreurs) 22.88% effectué, 1:10 écoulé. (0/0/0 erreurs) 23.38% effectué, 1:11 écoulé. (0/0/0 erreurs) 23.75% effectué, 1:23 écoulé. (0/0/0 erreurs) 24.25% effectué, 1:24 écoulé. (0/0/0 erreurs) 24.75% effectué, 1:25 écoulé. (0/0/0 erreurs) 25.25% effectué, 1:26 écoulé. (0/0/0 erreurs) 25.75% effectué, 1:27 écoulé. (0/0/0 erreurs) 26.25% effectué, 1:28 écoulé. (0/0/0 erreurs) 26.75% effectué, 1:29 écoulé. (0/0/0 erreurs) 27.25% effectué, 1:30 écoulé. (0/0/0 erreurs) 27.62% effectué, 1:31 écoulé. (0/0/0 erreurs) 28.12% effectué, 1:32 écoulé. (0/0/0 erreurs) 28.75% effectué, 1:33 écoulé. (0/0/0 erreurs) 29.50% effectué, 1:34 écoulé. (0/0/0 erreurs) 30.25% effectué, 1:35 écoulé. (0/0/0 erreurs) 30.50% effectué, 1:36 écoulé. (0/0/0 erreurs) 30.75% effectué, 1:37 écoulé. (0/0/0 erreurs) 31.50% effectué, 1:38 écoulé. (0/0/0 erreurs) 31.75% effectué, 1:40 écoulé. (0/0/0 erreurs) 32.38% effectué, 1:41 écoulé. (0/0/0 erreurs) 33.12% effectué, 1:42 écoulé. (0/0/0 erreurs) 33.25% effectué, 1:48 écoulé. (0/0/0 erreurs) 33.50% effectué, 1:49 écoulé. (0/0/0 erreurs) 33.88% effectué, 1:51 écoulé. (0/0/0 erreurs) 34.25% effectué, 1:52 écoulé. (0/0/0 erreurs)badblocks: Erreur d'entrée/sortie lors du test d'écriture de données, bloc 26935296
26935296
26941312
26941313
(...)
[nothing special, just the sector count]
(...)
52297725
52297726
52297727
66.50% effectué, 4:44 écoulé. (21/0/98684 erreurs) 66.75% effectué, 4:45 écoulé. (21/0/98684 erreurs) 67.00% effectué, 4:46 écoulé. (21/0/98684 erreurs) 67.38% effectué, 4:47 écoulé. (21/0/98684 erreurs) 67.75% effectué, 4:48 écoulé. (21/0/98684 erreurs) 68.00% effectué, 4:49 écoulé. (21/0/98684 erreurs) 68.38% effectué, 4:50 écoulé. (21/0/98684 erreurs) 68.62% effectué, 4:51 écoulé. (21/0/98684 erreurs) 69.00% effectué, 4:52 écoulé. (21/0/98684 erreurs) 69.14% effectué, 4:53 écoulé. (21/0/98684 erreurs) 69.19% effectué, 4:54 écoulé. (21/0/98684 erreurs)54448604
54448605
69.23% effectué, 4:55 écoulé. (23/0/98684 erreurs)54448606
54448607
69.25% effectué, 4:57 écoulé. (25/0/98684 erreurs) 69.38% effectué, 5:00 écoulé. (25/0/98684 erreurs) 69.50% effectué, 5:01 écoulé. (25/0/98684 erreurs) 69.63% effectué, 5:02 écoulé. (25/0/98684 erreurs) 69.68% effectué, 5:03 écoulé. (25/0/98684 erreurs)54838304
69.73% effectué, 5:05 écoulé. (26/0/98684 erreurs)54838305
54838306
54838307
69.75% effectué, 5:07 écoulé. (29/0/98684 erreurs) 69.88% effectué, 5:08 écoulé. (29/0/98684 erreurs) 70.00% effectué, 5:10 écoulé. (29/0/98684 erreurs) 70.12% effectué, 5:12 écoulé. (29/0/98684 erreurs) 70.25% effectué, 5:14 écoulé. (29/0/98684 erreurs) 70.38% effectué, 5:17 écoulé. (29/0/98684 erreurs) 70.50% effectué, 5:18 écoulé. (29/0/98684 erreurs) 70.62% effectué, 5:19 écoulé. (29/0/98684 erreurs) 70.75% effectué, 5:20 écoulé. (29/0/98684 erreurs) 71.38% effectué, 5:21 écoulé. (29/0/98684 erreurs) 71.50% effectué, 5:24 écoulé. (29/0/98684 erreurs) 71.62% effectué, 5:26 écoulé. (29/0/98684 erreurs) 71.75% effectué, 5:27 écoulé. (29/0/98684 erreurs)56524800
71.88% effectué, 5:30 écoulé. (30/0/98684 erreurs) 72.07% effectué, 5:31 écoulé. (30/0/98684 erreurs) 72.25% effectué, 5:32 écoulé. (30/0/98684 erreurs) 73.00% effectué, 5:33 écoulé. (30/0/98684 erreurs) 73.38% effectué, 5:36 écoulé. (30/0/98684 erreurs) 73.50% effectué, 5:37 écoulé. (30/0/98684 erreurs) 73.75% effectué, 5:38 écoulé. (30/0/98684 erreurs) 74.12% effectué, 5:39 écoulé. (30/0/98684 erreurs) 74.50% effectué, 5:40 écoulé. (30/0/98684 erreurs) 75.25% effectué, 5:41 écoulé. (30/0/98684 erreurs) 75.88% effectué, 5:42 écoulé. (30/0/98684 erreurs) 76.12% effectué, 5:43 écoulé. (30/0/98684 erreurs) 76.38% effectué, 5:45 écoulé. (30/0/98684 erreurs)60092448
60092449
76.41% effectué, 5:47 écoulé. (32/0/98684 erreurs)60092450
60092451
76.46% effectué, 5:48 écoulé. (34/0/98684 erreurs) 76.50% effectué, 5:49 écoulé. (34/0/98684 erreurs) 76.62% effectué, 5:52 écoulé. (34/0/98684 erreurs) 76.75% effectué, 5:54 écoulé. (34/0/98684 erreurs) 76.88% effectué, 5:56 écoulé. (34/0/98684 erreurs) 77.00% effectué, 5:58 écoulé. (34/0/98684 erreurs) 77.12% effectué, 6:02 écoulé. (34/0/98684 erreurs) 77.25% effectué, 6:03 écoulé. (34/0/98684 erreurs) 77.62% effectué, 6:04 écoulé. (34/0/98684 erreurs) 77.75% effectué, 6:09 écoulé. (34/0/98684 erreurs) 77.92% effectué, 6:10 écoulé. (34/0/98684 erreurs) 77.97% effectué, 6:11 écoulé. (34/0/98684 erreurs) 78.00% effectué, 6:12 écoulé. (34/0/98684 erreurs) 78.38% effectué, 6:14 écoulé. (34/0/98684 erreurs) 78.62% effectué, 6:15 écoulé. (34/0/98684 erreurs) 78.88% effectué, 6:16 écoulé. (34/0/98684 erreurs) 79.25% effectué, 6:17 écoulé. (34/0/98684 erreurs) 79.50% effectué, 6:18 écoulé. (34/0/98684 erreurs) 79.88% effectué, 6:19 écoulé. (34/0/98684 erreurs) 80.12% effectué, 6:20 écoulé. (34/0/98684 erreurs) 80.50% effectué, 6:21 écoulé. (34/0/98684 erreurs) 80.75% effectué, 6:22 écoulé. (34/0/98684 erreurs) 81.12% effectué, 6:23 écoulé. (34/0/98684 erreurs) 81.50% effectué, 6:24 écoulé. (34/0/98684 erreurs) 81.75% effectué, 6:25 écoulé. (34/0/98684 erreurs) 82.12% effectué, 6:26 écoulé. (34/0/98684 erreurs) 82.38% effectué, 6:27 écoulé. (34/0/98684 erreurs) 82.75% effectué, 6:28 écoulé. (34/0/98684 erreurs) 83.00% effectué, 6:29 écoulé. (34/0/98684 erreurs) 83.38% effectué, 6:30 écoulé. (34/0/98684 erreurs) 83.62% effectué, 6:36 écoulé. (34/0/98684 erreurs) 83.75% effectué, 6:41 écoulé. (34/0/98684 erreurs) 84.00% effectué, 6:42 écoulé. (34/0/98684 erreurs) 84.38% effectué, 6:43 écoulé. (34/0/98684 erreurs) 84.62% effectué, 6:45 écoulé. (34/0/98684 erreurs) 85.00% effectué, 6:46 écoulé. (34/0/98684 erreurs) 85.25% effectué, 6:47 écoulé. (34/0/98684 erreurs) 85.62% effectué, 6:48 écoulé. (34/0/98684 erreurs) 85.88% effectué, 6:49 écoulé. (34/0/98684 erreurs) 86.25% effectué, 6:50 écoulé. (34/0/98684 erreurs) 86.50% effectué, 6:51 écoulé. (34/0/98684 erreurs) 86.88% effectué, 6:53 écoulé. (34/0/98684 erreurs) 87.12% effectué, 6:54 écoulé. (34/0/98684 erreurs) 87.38% effectué, 6:55 écoulé. (34/0/98684 erreurs) 87.75% effectué, 6:56 écoulé. (34/0/98684 erreurs) 88.00% effectué, 6:57 écoulé. (34/0/98684 erreurs) 88.38% effectué, 6:58 écoulé. (34/0/98684 erreurs) 88.62% effectué, 6:59 écoulé. (34/0/98684 erreurs) 88.75% effectué, 7:00 écoulé. (34/0/98684 erreurs) 88.80% effectué, 7:01 écoulé. (34/0/98684 erreurs)69846436
69846437
69846438
88.81% effectué, 7:02 écoulé. (37/0/98684 erreurs)69846439
88.86% effectué, 7:03 écoulé. (38/0/98684 erreurs) 88.88% effectué, 7:05 écoulé. (38/0/98684 erreurs) 89.00% effectué, 7:07 écoulé. (38/0/98684 erreurs) 89.12% effectué, 7:16 écoulé. (38/0/98684 erreurs) 89.25% effectué, 7:17 écoulé. (38/0/98684 erreurs) 89.38% effectué, 7:19 écoulé. (38/0/98684 erreurs) 89.50% effectué, 7:21 écoulé. (38/0/98684 erreurs) 89.52% effectué, 7:22 écoulé. (38/0/98684 erreurs)70413984
70413985
70413986
89.54% effectué, 7:23 écoulé. (41/0/98684 erreurs)70413987
89.58% effectué, 7:24 écoulé. (42/0/98684 erreurs) 89.63% effectué, 7:25 écoulé. (42/0/98684 erreurs) 89.66% effectué, 7:26 écoulé. (42/0/98684 erreurs) 89.68% effectué, 7:27 écoulé. (42/0/98684 erreurs) 89.72% effectué, 7:28 écoulé. (42/0/98684 erreurs) 89.75% effectué, 7:30 écoulé. (42/0/98684 erreurs) 89.88% effectué, 7:32 écoulé. (42/0/98684 erreurs) 90.00% effectué, 7:34 écoulé. (42/0/98684 erreurs) 90.12% effectué, 7:36 écoulé. (42/0/98684 erreurs) 90.25% effectué, 7:38 écoulé. (42/0/98684 erreurs) 90.38% effectué, 7:40 écoulé. (42/0/98684 erreurs) 90.50% effectué, 7:42 écoulé. (42/0/98684 erreurs) 90.75% effectué, 7:43 écoulé. (42/0/98684 erreurs) 90.88% effectué, 7:45 écoulé. (42/0/98684 erreurs)71474272
71474273
71474274
71474275
90.89% effectué, 7:46 écoulé. (46/0/98684 erreurs)71485300
71485301
90.90% effectué, 7:49 écoulé. (48/0/98684 erreurs)71485302
71485303
90.91% effectué, 7:50 écoulé. (50/0/98684 erreurs) 90.97% effectué, 7:51 écoulé. (50/0/98684 erreurs) 91.00% effectué, 7:53 écoulé. (50/0/98684 erreurs) 91.13% effectué, 7:54 écoulé. (50/0/98684 erreurs) 91.16% effectué, 7:55 écoulé. (50/0/98684 erreurs) 91.19% effectué, 7:56 écoulé. (50/0/98684 erreurs) 91.22% effectué, 7:57 écoulé. (50/0/98684 erreurs) 91.25% effectué, 7:58 écoulé. (50/0/98684 erreurs) 91.28% effectué, 7:59 écoulé. (50/0/98684 erreurs) 91.30% effectué, 8:00 écoulé. (50/0/98684 erreurs) 91.33% effectué, 8:01 écoulé. (50/0/98684 erreurs) 91.36% effectué, 8:02 écoulé. (50/0/98684 erreurs) 91.38% effectué, 8:04 écoulé. (50/0/98684 erreurs) 91.50% effectué, 8:06 écoulé. (50/0/98684 erreurs) 91.62% effectué, 8:08 écoulé. (50/0/98684 erreurs) 91.75% effectué, 8:10 écoulé. (50/0/98684 erreurs) 91.88% effectué, 8:12 écoulé. (50/0/98684 erreurs) 92.00% effectué, 8:13 écoulé. (50/0/98684 erreurs) 92.62% effectué, 8:15 écoulé. (50/0/98684 erreurs) 92.75% effectué, 8:17 écoulé. (50/0/98684 erreurs) 92.88% effectué, 8:20 écoulé. (50/0/98684 erreurs) 93.38% effectué, 8:21 écoulé. (50/0/98684 erreurs) 94.00% effectué, 8:22 écoulé. (50/0/98684 erreurs) 94.62% effectué, 8:23 écoulé. (50/0/98684 erreurs) 94.88% effectué, 8:24 écoulé. (50/0/98684 erreurs) 95.25% effectué, 8:27 écoulé. (50/0/98684 erreurs) 95.50% effectué, 8:28 écoulé. (50/0/98684 erreurs) 96.00% effectué, 8:29 écoulé. (50/0/98684 erreurs) 96.25% effectué, 8:30 écoulé. (50/0/98684 erreurs) 96.62% effectué, 8:31 écoulé. (50/0/98684 erreurs) 96.88% effectué, 8:32 écoulé. (50/0/98684 erreurs) 97.25% effectué, 8:33 écoulé. (50/0/98684 erreurs) 97.62% effectué, 8:34 écoulé. (50/0/98684 erreurs) 98.25% effectué, 8:35 écoulé. (50/0/98684 erreurs) 98.88% effectué, 8:36 écoulé. (50/0/98684 erreurs) 99.50% effectué, 8:37 écoulé. (50/0/98684 erreurs)complété
Passe complétée, 98734 blocs défectueux repérés. (50/0/98684 erreurs) |
WOOOHOOOOOO!!! 98734 blocs défectueux repérés: Plenty of bad blocks, really????
Again, I check the filesystem and I got this (in french too):
| Code: | root@xubuntu:~# fsck.ext4 /dev/sda3
e2fsck 1.46.5 (30-Dec-2021)
GENTOO : propre, 1094998/4587520 fichiers, 9263202/18349568 blocs
root@xubuntu:~# fsck.ext4 -v /dev/sda3
e2fsck 1.46.5 (30-Dec-2021)
GENTOO : propre, 1094998/4587520 fichiers, 9263202/18349568 blocs |
FS is clean??
But with -f option, I get
| Code: | root@xubuntu:~# fsck.ext4 -fv /dev/sda3
e2fsck 1.46.5 (30-Dec-2021)
Passe 1 : vérification des i-noeuds, des blocs et des tailles
Passe 2 : vérification de la structure des répertoires
Passe 3 : vérification de la connectivité des répertoires
Passe 4 : vérification des compteurs de référence
Passe 5 : vérification de l'information du sommaire de groupe
1094998 i-noeuds utilisés (23.87%, sur 4587520)
929 fichiers non contigus (0.1%)
526 répertoires non contigus (0.0%)
nombre d'i-noeuds avec des blocs ind/dind/tind : 0/0/0
Histogramme des profondeurs d'extents : 1073961/123
9263202 blocs utilisés (50.48%, sur 18349568)
12 blocs défectueux
2 fichiers de grande taille
992336 fichiers normaux
81503 répertoires
174 fichiers de périphérique en mode caractère
97 fichiers de périphérique en mode bloc
9 fifos
576 liens
20869 liens symboliques (20625 liens symboliques rapides)
1 socket
------------
1095565 fichiers |
12 bad blocs?
Which prog I have to believe??
so, I tried this:
| Code: | root@xubuntu:~# fsck.ext4 -vcDfty -C 0 /dev/sda3
e2fsck 1.46.5 (30-Dec-2021)
Vérification des blocs défectueux (test en mode lecture seule) : complété
GENTOO: Updating bad block inode.
Passe 1 : vérification des i-noeuds, des blocs et des tailles
Passe 2 : vérification de la structure des répertoires
Passe 3 : vérification de la connectivité des répertoires
Passe 3A : optimisation des répertoires
L'arbre d'extent de l'i-noeud 1184141 (au niveau 1) pourrait être plus court. Optimiser ? oui
Passe 4 : vérification des compteurs de référence
Passe 5 : vérification de l'information du sommaire de groupe
GENTOO: ***** LE SYSTÈME DE FICHIERS A ÉTÉ MODIFIÉ *****
1094998 i-noeuds utilisés (23.87%, sur 4587520)
929 fichiers non contigus (0.1%)
526 répertoires non contigus (0.0%)
nombre d'i-noeuds avec des blocs ind/dind/tind : 0/0/0
Histogramme des profondeurs d'extents : 1073961/123
9262743 blocs utilisés (50.48%, sur 18349568)
12 blocs défectueux
2 fichiers de grande taille
992336 fichiers normaux
81503 répertoires
174 fichiers de périphérique en mode caractère
97 fichiers de périphérique en mode bloc
9 fifos
576 liens
20869 liens symboliques (20625 liens symboliques rapides)
1 socket
------------
1095565 fichiers
Mémoire utilisée : 17728k/0k (2655k/15074k), temps : 178.14/ 7.90/ 3.28
I/O read: 1190MB, write: 412MB, rate: 8.99MB/s |
After this process, I rebooted into the Gentoo Guest OS VM itself, and now when I try to emerge, I got this, for example:
| Code: | emerge --help
python-exec: Unable to execute /usr/lib/python-exec/python3.11/emerge: Exec format error.
emerge: no python-exec wrapped executable found in /usr/lib/python-exec.
emerge -avupDN @world
python-exec: Unable to execute /usr/lib/python-exec/python3.11/emerge: Exec format error.
emerge: no python-exec wrapped executable found in /usr/lib/python-exec.
emerge-webrsync
python-exec: Unable to execute /usr/lib/python-exec/python3.11/portageq: Exec format error.
portageq: no python-exec wrapped executable found in /usr/lib/python-exec.
/usr/bin/emerge-webrsync: ligne 93: /isolated-functions.sh: Aucun fichier ou dossier de ce type |
| Code: | /usr/lib/python-exec/python3.11/emerge -1 python-exec
/usr/lib/python-exec/python3.11/emerge: ligne 5: import : commande introuvable
/usr/lib/python-exec/python3.11/emerge: ligne 6: import : commande introuvable
/usr/lib/python-exec/python3.11/emerge: ligne 7: import : commande introuvable
/usr/lib/python-exec/python3.11/emerge: ligne 10: erreur de syntaxe près du symbole inattendu « ( »
/usr/lib/python-exec/python3.11/emerge: ligne 10: `raise_signal = getattr('
|
| Code: | eselect python list
!!! Error: Can't load module python |
Everything seems to work good and well, except prog where python is required: seem the fsck broke somme files on the root partition.
- VM is booted: XFCE4 works, Thunar, Terminal, Internet Connection, etc.
- I can connect to the VM via SSH and can transfer files or/and directories via SCP
eix is OK, example:
| Code: | gentoo-ph1l-vbox ~ # eix-test-obsolete
No non-matching entries in /etc/portage/package.keywords
No non-matching entries in /etc/portage/package.accept_keywords
No non-matching entries in /etc/portage/package.mask
No non-matching entries in /etc/portage/package.unmask
No non-matching or empty entries in /etc/portage/package.use
No non-matching or empty entries in /etc/portage/package.env
No non-matching or empty entries in /etc/portage/package.license
No non-matching or empty entries in /etc/portage/package.accept_restrict
No non-matching or empty entries in /etc/portage/package.cflags
The following installed packages are not in the database:
gui-libs/libgedit-amtk
--
Redundant in /etc/portage/package.{,accept_}keywords:
... considered as REDUNDANT_IF_NO_CHANGE
[I] app-text/libmspub (0.1.4@18/07/2023): Library parsing Microsoft Publisher documents
[I] app-text/libwpd (0.10.3(0.10)@18/07/2023): WordPerfect Document import/export library
[I] dev-libs/boost (1.82.0-r1(0/1.82.0)@18/07/2023): Boost Libraries for C++
[I] dev-util/cbindgen (0.24.3@18/07/2023): A tool for generating C bindings to Rust code
[N] gnustep-base/gnustep-base (1.27.0-r1(0/1.27)): A library of general-purpose, non-graphical Objective C objects
[N] gnustep-base/gnustep-make (2.8.0-r1): GNUstep Makefile Package
[?] net-libs/nodejs (20.5.1(0/20)@28/08/2023 -> (~)20.3.1(0/20)^t): A JavaScript runtime built on Chrome's V8 JavaScript engine
[I] sys-devel/clang (15.0.7-r3(15/15g1)@20/07/2023 16.0.6(16/16)@19/07/2023): C language family frontend for LLVM
[N] www-client/librewolf [1] ((~)115.0.2_p2(0/115)): LibreWolf Web Browser
[1] "librewolf" /var/db/repos/librewolf
Found 9 matches
Not installed but in /etc/portage/package.{,accept_}keywords:
[N] gnustep-base/gnustep-base (1.27.0-r1(0/1.27)): A library of general-purpose, non-graphical Objective C objects
[N] gnustep-base/gnustep-make (2.8.0-r1): GNUstep Makefile Package
[N] www-client/librewolf [1] ((~)115.0.2_p2(0/115)): LibreWolf Web Browser
[1] "librewolf" /var/db/repos/librewolf
Found 3 matches
No redundant entries in /etc/portage/package.mask
No uninstalled entries in /etc/portage/package.mask
Redundant in /etc/portage/package.unmask:
... considered as REDUNDANT_IF_UNMASK_NO_CHANGE
[N] www-client/librewolf [1] ((~)115.0.2_p2(0/115)): LibreWolf Web Browser
[?] x11-misc/copyq (7.0.0@19/07/2023 -> ~7.0.0^t): Clipboard manager with advanced features
[1] "librewolf" /var/db/repos/librewolf
Found 2 matches
Not installed but in /etc/portage/package.unmask:
[N] www-client/librewolf [1] ((~)115.0.2_p2(0/115)): LibreWolf Web Browser
[1] "librewolf" /var/db/repos/librewolf
Skipping check: redundant entries in /etc/portage/package.use
Skipping check: uninstalled entries in /etc/portage/package.use
Skipping check: redundant entries in /etc/portage/package.env
Skipping check: uninstalled entries in /etc/portage/package.env
No redundant entries in /etc/portage/package.license
Not installed but in /etc/portage/package.license:
[N] acct-group/_cron-failure (0-r1): A group for sys-process/systemd-cron failure emails
[N] acct-group/aerospike-amc (0-r1): A group for app-admin/aerospike-amc-community
[N] acct-group/airdcppd (0-r2): Group for net-p2p/airdcpp-webclient
[N] acct-group/alertmanager (0-r1): System group: alertmanager
[N] acct-group/amanda (0-r1): System group: amanda
[N] acct-group/amavis (0-r2): Group for mail-filter/amavisd-new
[N] acct-group/amule (0-r2): Group for net-p2p/amule
[N] acct-group/android (0-r1): Group for dev-util/android-{ndk,sdk-update-manager}
[N] acct-group/anope (0-r2): Group for Anope IRC services
[N] acct-group/apache (0-r3): System group: apache
[N] acct-group/apt-cacher-ng (0-r1): System group: apt-cacher-ng
[N] acct-group/argus (0-r1): gid for net-analyzer/argus
[N] acct-group/arpwatch (0-r1): A group for net-analyzer/arpwatch
[N] acct-group/artifactory (--): Group for dev-util/artifactory-bin
[N] acct-group/aspnet (0-r1): System group: aspnet
[N] acct-group/asterisk (0-r2): Group for asterisk
[N] acct-group/at (0-r1): System group: at
[N] acct-group/atheme-services (0-r2): Group for Atheme IRC services
[N] acct-group/automatic (0-r1): System group: automatic
[N] acct-group/automx2 (0-r2): Group for net-mail/automx2
[N] acct-group/avahi (0-r2): group for avahi
[N] acct-group/avahi-autoipd (0-r2): group for avahi-autoipd
[N] acct-group/axtls (0-r1): A group for net-libs/axtls
[N] acct-group/backuppc (0-r1): Group for app-backup/backuppc
[N] acct-group/bacula (0-r2): A group for the bacula backup system
[N] acct-group/bareos (0-r2): Group for the bareos network backup suite
[N] acct-group/beanstalk (0-r1): A group for app-misc/beanstalkd
[N] acct-group/bedrock (0-r2): A group for the Minecraft Bedrock server
[N] acct-group/biboumi (0-r1): System group: biboumi
[N] acct-group/bind_exporter (0-r2): System group: bind_exporter
[N] acct-group/bird (0-r1): System group: bird
[N] acct-group/bitcoin (0-r2): A group for users with access to system-wide Bitcoin services
[N] acct-group/bitflu (0-r1): A group for net-p2p/bitflu
[N] acct-group/bitlbee (0-r2): System group: bitlbee
[N] acct-group/blackbox_exporter (0-r1): System group: blackbox_exporter
[N] acct-group/boinc (0-r1): Group for sci-misc/boinc
[N] acct-group/brlapi (0-r1): System group: brlapi
[N] acct-group/brltty (0-r1): System group: brltty
[N] acct-group/buildbot (0-r2): Buildbot program group
[N] acct-group/bumblebee (0-r1): System group: bumblebee
[N] acct-group/burp (0-r2): Group for the app-backup/burp server
[N] acct-group/burrow_exporter (0-r2): A group for app-metrics/burrow_exporter
[N] acct-group/cadvisor (0-r2): System group: cadvisor
[N] acct-group/cancd (0-r1): A group for the CA NetConsole Daemon
[N] acct-group/carbon (0-r2): System group: carbon
[N] acct-group/ceph (0-r2): System group: ceph
[N] acct-group/cgit (0-r1): System group: cgit
[N] acct-group/chronograf (0-r2): System group: chronograf
[N] acct-group/cinder (--): System group: cinder
[N] acct-group/clair (0-r2): System group: clair
[1] "librewolf" /var/db/repos/librewolf
[2] "linuxunderground-overlay" /var/db/repos/linuxunderground-overlay
[3] "palemoon" /var/db/repos/palemoon
[4] "torbrowser" /var/db/repos/torbrowser
Found 17891 matches
Only 50 matches displayed on terminal
Set EIX_LIMIT=0 to show all matches
No redundant entries in /etc/portage/package.accept_restrict
No uninstalled entries in /etc/portage/package.accept_restrict
Skipping check: redundant entries in /etc/portage/package.cflags
Skipping check: uninstalled entries in /etc/portage/package.cflags
Installed packages with a version not in the database (or masked):
[?] acct-user/cron (0-r2@23/09/2023 -> 0-r1): A user for sys-process/cronbase
[?] app-admin/eclean-kernel (2.99.5@24/09/2023 -> 2.99.3^t): Remove outdated built kernels
[?] app-admin/eselect (1.4.26@23/09/2023 -> 1.4.25): Gentoo's multi-purpose configuration and management tool
[?] app-admin/perl-cleaner (2.31@03/09/2023 -> 2.30-r1): User land tool for cleaning up old perl installs
[?] app-admin/sudo (1.9.14_p3@23/09/2023 -> 1.9.13_p3-r1): Allows users or groups to run commands as other users
[?] app-arch/bzip3 (1.3.2@23/09/2023 -> 1.3.1): A better and stronger spiritual successor to BZip2
[?] app-arch/engrampa (1.26.1@23/09/2023 -> 1.26.0-r1): Engrampa archive manager for MATE
[?] app-arch/gzip (1.13@23/09/2023 -> 1.12-r4): Standard GNU compressor
[?] app-arch/libarchive (3.7.1(0/13)@28/08/2023 -> 3.6.2-r1(0/13)): Multi-format archive and compression library
[?] app-arch/rar (6.23@28/08/2023 -> 6.22^md): RAR compressor/uncompressor
[?] app-arch/tar (1.35@28/08/2023 -> 1.34-r3): Use this to make tarballs :)
[?] app-arch/unrar (6.2.10(0/6)@23/09/2023 -> 6.2.8(0/6)): Uncompress rar files
[?] app-crypt/gpgme (1.21.0(1/11.6.15.2)@28/08/2023 -> 1.20.0(1/11.6.15.2)^t): GnuPG Made Easy is a library for making GnuPG easier to use
[?] app-crypt/libmd (1.1.0@28/08/2023 -> 1.0.4): Message Digest functions from BSD systems
[?] app-crypt/p11-kit (0.25.0-r1@23/09/2023 -> 0.24.1-r1): Provides a standard configuration setup for installing PKCS#11
[?] app-crypt/qca (2.3.7(2)@28/08/2023 -> 2.3.6-r1(2)^t): Qt Cryptographic Architecture (QCA)
[?] app-editors/gedit (46.1@03/09/2023 -> 44.2): A text editor for the GNOME desktop
[?] app-editors/gedit-plugins (46.0@03/09/2023 -> 44.1): Collection of extra plugins for the gedit Text Editor
[?] app-editors/vim (9.0.1627@04/09/2023 -> 9.0.1503): Vim, an improved vi-style text editor
[?] app-editors/vim-core (9.0.1627@04/09/2023 -> 9.0.1503): vim and gvim shared files
[?] app-eselect/eselect-vi (20221122@03/09/2023 -> 1.2): Manages the /usr/bin/vi symlink
[?] app-office/libreoffice (7.5.5.2@28/08/2023 -> 7.5.3.2^t): A full office productivity suite
[?] app-office/libreoffice-l10n (7.5.5.2@28/08/2023 -> 7.5.3.2^s): Translations for the Libreoffice suite
[?] app-portage/eix (0.36.7@28/08/2023 -> 0.36.6): Search and query ebuilds
[?] app-portage/genlop (0.30.11@28/08/2023 -> 0.30.10-r2): Nice emerge.log parser
[?] app-portage/portage-utils (0.96.1@28/08/2023 -> 0.96-r1): Small and fast Portage helper tools written in C
[?] app-text/gspell (1.12.2(0/2)@03/09/2023 -> 1.12.1(0/2)^t): Spell check library for GTK+ applications
[?] app-text/libpaper (2.1.0(0/2)@23/09/2023 -> 2.0.12(0/2)): Library for handling paper characteristics
[?] app-text/opensp (1.5.2-r10@28/08/2023 -> 1.5.2-r9^t): A free, object-oriented toolkit for SGML parsing and entity management
[?] app-text/poppler (23.08.0(0/130)@28/08/2023 -> 23.05.0(0/128)^t): PDF rendering library based on the xpdf-3.0 code base
[?] app-text/poppler-data (0.4.12@28/08/2023 -> 0.4.11-r2): Data files for poppler to support uncommon encodings without xpdfrc
[?] app-text/qpdf (11.5.0(0/11)@28/08/2023 -> 11.3.0(0/11)^t): Command-line tool for structural, content-preserving transformation of PDF files
[?] app-text/xmlto (0.0.28-r11@23/09/2023 -> 0.0.28-r10): Script for converting XML and DocBook documents to a variety of output formats
[?] app-vim/gentoo-syntax (11@28/08/2023 -> 10): vim plugin: Gentoo and Portage syntax highlighting
[U?] dev-cpp/gtkmm (3.24.8(3.0)@03/09/2023 -> 2.24.5-r1(2.4)^t 3.24.7(3.0)^t 4.10.0(4.0)^t): C++ interface for GTK+
[?] dev-db/unixODBC (2.3.12@23/09/2023 -> 2.3.11): Complete ODBC driver manager
[?] dev-lang/lua (5.4.6(5.4)@23/09/2023 -> 5.1.5-r200(5.1) 5.3.6-r102(5.3) 5.4.4-r103(5.4)): A powerful light-weight programming language designed for extending applications
[?] dev-lang/perl (5.38.0-r1(0/5.38)@03/09/2023 -> 5.36.1-r3(0/5.36)): Larry Wall's Practical Extraction and Report Language
[?] dev-lang/python (3.11.5(3.11)@28/08/2023 -> 2.7.18_p16-r1(2.7)^t 3.8.17(3.8)^t 3.9.17(3.9)^t 3.10.12(3.10)^t 3.11.4(3.11)^t): An interpreted, interactive, object-oriented programming language
[?] dev-lang/rust-bin (1.71.1(stable)@23/09/2023 -> 1.69.0-r1(stable)): Systems programming language from Mozilla
[?] dev-libs/boehm-gc (8.2.4@23/09/2023 -> 8.2.2-r1): The Boehm-Demers-Weiser conservative garbage collector
[?] dev-libs/elfutils (0.189-r1@28/08/2023 -> 0.188^t): Libraries/utilities to handle ELF objects (drop in replacement for libelf)
[?] dev-libs/glib (2.76.4(2)@03/09/2023 -> 2.76.3(2)^t): The GLib library of C routines
[?] dev-libs/gmp (6.3.0(0/10.4)@23/09/2023 -> 6.2.1-r5(0/10.4)^d): Library for arbitrary-precision arithmetic on different type of numbers
[?] dev-libs/icu (73.2(0/73.1)@28/08/2023 -> 73.1-r2(0/73.1)^t): International Components for Unicode
[?] dev-libs/libassuan (2.5.6@28/08/2023 -> 2.5.5): IPC library used by GnuPG and GPGME
[?] dev-libs/libbytesize (2.9@23/09/2023 -> 2.8^t): Tiny library providing a C "class" for working with arbitrary big sizes in bytes
[?] dev-libs/libgcrypt (1.10.2(0/20)@23/09/2023 -> 1.10.1-r3(0/20)): General purpose crypto library based on the code used in GnuPG
[?] dev-libs/libgudev (238-r1(0/0)@03/09/2023 -> 237-r1(0/0)^t): GObject bindings for libudev
[?] dev-libs/libksba (1.6.4-r1@23/09/2023 -> 1.6.3): X.509 and CMS (PKCS#7) library
Found 247 matches
Only 50 matches displayed on terminal
Set EIX_LIMIT=0 to show all matches
gentoo-ph1l-vbox ~ # |
Question:
How can I solve this: repair via chroot?
Is it only possible to fix this? |
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philoo
n00b
Joined: 16 Jul 2008
Posts: 37
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| Posted: Mon Oct 02, 2023 1:52 pm Post subject: |
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OK I can see there's much answers here.
But I think, it's probably solved.
I booted the VM with the Minimal ISO
Set up a SSH access with root
I check the filesystem of the root partition /dev/sda3
| Code: | livecd ~ # e2fsck /dev/sda3
e2fsck 1.47.0 (5-Feb-2023)
GENTOO: recovering journal
Setting free inodes count to 6872597 (was 6872598)
Setting free blocks count to 21968867 (was 21968868)
GENTOO: clean, 803307/7675904 files, 8725789/30694656 blocks
livecd ~ # e2fsck -fb /dev/sda3
Invalid non-numeric argument to -b ("/dev/sda3")
livecd ~ # e2fsck -fv /dev/sda3
e2fsck 1.47.0 (5-Feb-2023)
Pass 1: Checking inodes, blocks, and sizes
Pass 2: Checking directory structure
Pass 3: Checking directory connectivity
Pass 4: Checking reference counts
Pass 5: Checking group summary information
803307 inodes used (10.47%, out of 7675904)
840 non-contiguous files (0.1%)
343 non-contiguous directories (0.0%)
# of inodes with ind/dind/tind blocks: 0/0/0
Extent depth histogram: 782302/92
8725789 blocks used (28.43%, out of 30694656)
0 bad blocks
2 large files
720116 regular files
62033 directories
174 character device files
97 block device files
9 fifos
576 links
20868 symbolic links (20624 fast symbolic links)
1 socket
------------
803874 files |
It seems everything is OK
Then I followed this
https://wiki.gentoo.org/wiki/Fix_my_Gentoo
Chroot the Gentoo and:
Builded packages KO (emerge, eselect, gedit) and installed binary packages
Then quit the chroot and reboot into Gentoo VM, so I've this:
| Code: | emerge --help
emerge: command-line interface to the Portage system
Usage:
emerge [ options ] [ action ] [ ebuild | tbz2 | file | @set | atom ] [ ... ]
emerge [ options ] [ action ] < @system | @world >
emerge < --sync | --metadata | --info >
emerge --resume [ --pretend | --ask | --skipfirst ]
emerge --help
Options: -[abBcCdDefgGhjkKlnNoOpPqrsStuUvVwW]
[ --color < y | n > ] [ --columns ]
[ --complete-graph ] [ --deep ]
[ --jobs JOBS ] [ --keep-going ] [ --load-average LOAD ]
[ --newrepo ] [ --newuse ] [ --noconfmem ] [ --nospinner ]
[ --oneshot ] [ --onlydeps ] [ --quiet-build [ y | n ] ]
[ --reinstall changed-use ] [ --with-bdeps < y | n > ]
Actions: [ --depclean | --list-sets | --search | --sync | --version ]
For more help consult the man page.
|
and:
| Code: | eselect --help
Usage: eselect <global options> <module name> <module options>
Global options:
--brief Make output shorter
--colour=<yes|no|auto> Enable or disable colour output (default 'auto')
--eprefix=<path> Override the EPREFIX variable for a cross-prefix build
--root=<path> The target root path for eselect's operations
Built-in modules:
help Display a help message
usage Display a usage message
version Display version information
Extra modules:
arptables Manage the iptables/arptables/ebtables symlinks
bashcomp Manage contributed bash-completion scripts
binutils Manage installed versions of sys-devel/binutils
cdparanoia Manage /usr/bin/cdparanoia implementation
ebtables Manage the iptables/arptables/ebtables symlinks
editor Manage the EDITOR environment variable
env Manage environment variables set in /etc/env.d/
fontconfig Manage fontconfig /etc/fonts/conf.d symlinks
gcc Manage installed versions of sys-devel/gcc
iptables Manage the iptables/arptables/ebtables symlinks
kernel Manage the /usr/src/linux symlink
locale Manage the LANG environment variable
lua Manage lua symlinks
modules Query eselect modules
mpg123 Manage /usr/bin/mpg123 implementation
news Read Gentoo ("GLEP 42") news items
notify-send Manage /usr/bin/notify-send implementation
pager Manage the PAGER environment variable
pinentry Manage /usr/bin/pinentry implementation
profile Manage the make.profile symlink
rc Manage /etc/init.d scripts in runlevels
repository Manage repository list in repos.conf
rust Manage the Rust compiler versions
vi Manage /usr/bin/vi implementations
visual Manage the VISUAL environment variable
wxwidgets Manage the system default wxWidgets profile
eselect profile list
Available profile symlink targets:
[1] default/linux/amd64/17.1 (stable)
[2] default/linux/amd64/17.1/selinux (stable)
[3] default/linux/amd64/17.1/hardened (stable)
[4] default/linux/amd64/17.1/hardened/selinux (stable)
[5] default/linux/amd64/17.1/desktop (stable)
[6] default/linux/amd64/17.1/desktop/gnome (stable)
[7] default/linux/amd64/17.1/desktop/gnome/systemd (stable)
[8] default/linux/amd64/17.1/desktop/gnome/systemd/merged-usr (stable)
[9] default/linux/amd64/17.1/desktop/plasma (stable)
[10] default/linux/amd64/17.1/desktop/plasma/systemd (stable)
[11] default/linux/amd64/17.1/desktop/plasma/systemd/merged-usr (stable)
[12] default/linux/amd64/17.1/desktop/systemd (stable) *
[13] default/linux/amd64/17.1/desktop/systemd/merged-usr (stable)
[14] default/linux/amd64/17.1/developer (exp)
[15] default/linux/amd64/17.1/no-multilib (stable)
[16] default/linux/amd64/17.1/no-multilib/hardened (stable)
[17] default/linux/amd64/17.1/no-multilib/hardened/selinux (stable)
[18] default/linux/amd64/17.1/no-multilib/systemd (dev)
[19] default/linux/amd64/17.1/no-multilib/systemd/merged-usr (dev)
[20] default/linux/amd64/17.1/no-multilib/systemd/selinux (exp)
[21] default/linux/amd64/17.1/no-multilib/systemd/selinux/merged-usr (exp)
[22] default/linux/amd64/17.1/systemd (stable)
[23] default/linux/amd64/17.1/systemd/merged-usr (stable)
[24] default/linux/amd64/17.1/systemd/selinux (exp)
[25] default/linux/amd64/17.1/systemd/selinux/merged-usr (exp)
[26] default/linux/amd64/17.1/clang (exp)
[27] default/linux/amd64/17.1/systemd/clang (exp)
[28] default/linux/amd64/17.1/systemd/clang/merged-usr (exp)
[29] default/linux/amd64/17.0/x32 (dev)
[30] default/linux/amd64/17.0/x32/systemd (exp)
[31] default/linux/amd64/17.0/x32/systemd/merged-usr (exp)
[32] default/linux/amd64/17.0/musl (dev)
[33] default/linux/amd64/17.0/musl/clang (exp)
[34] default/linux/amd64/17.0/musl/hardened (exp)
[35] default/linux/amd64/17.0/musl/hardened/selinux (exp)
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Gedit runs perfectly too.
LibreOffice runs too (tested Base, Writer, Draw, Math, Impress and Calc).
Comparing with the previous results, it's a good beginning.
I have some other things to check, but it's seems to me, I'm on the good way to solve the issue. |
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philoo
n00b
Joined: 16 Jul 2008
Posts: 37
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| Posted: Mon Oct 02, 2023 5:38 pm Post subject: |
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OK
Strange things
After ran
filsesystem became again read-only
I stopped the VM ans tried ti booted it. Here is what I got:
https://image.noelshack.com/fichiers/2023/40/1/1696267248-2023-10-02-16-34.png
Seems again problem with VBOX HDD and very broken now.
I closed the VM and remove the VMDK file in Storage Configuration of the VM
Then I go to menu Tools in V_Box then Support and for the Gentoo.vmdk I clicked on + and remove the {UUID}.vmdk file.
Go back in Storage Conf. for the Gentoo VM and Add the Gentoo.vmdk file again.
So, I booted the VM, it started well!
What happened here?
So! I opened a terminal and ran again:
without any issues!
Now, If I run
| Code: | | emerge -avupDN @world |
I have 77 updates
| Code: | Total: 77 packages (74 upgrades, 2 new, 1 in new slot), Size of downloads: 2 265 126 KiB
Conflict: 1 block (all satisfied) |
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philoo
n00b
Joined: 16 Jul 2008
Posts: 37
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| Posted: Tue Oct 03, 2023 6:01 am Post subject: |
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OK
It's over, my Gentoo VM Installation can't be fixed
Following the trial to update/upgrade, I got this
| Code: | >>> Emerging (1 of 77) sys-kernel/linux-firmware-20230919::gentoo
>>> Emerging (2 of 77) dev-libs/mpfr-4.2.1::gentoo
>>> Jobs: 0 of 77 complete, 2 running Load avg: 3.48, 1.12, 0.39Exception in callback AbstractEbuildProcess._async_waitpid_cb(54959, 1)
handle: <Handle AbstractEbuildProcess._async_waitpid_cb(54959, 1)>
Traceback (most recent call last):
File "/usr/lib/python3.11/asyncio/events.py", line 80, in _run
self._context.run(self._callback, *self._args)
File "/usr/lib/python3.11/site-packages/_emerge/AbstractEbuildProcess.py", line 420, in _async_waitpid_cb
self._unexpected_exit()
File "/usr/lib/python3.11/site-packages/_emerge/AbstractEbuildProcess.py", line 375, in _unexpected_exit
self._eerror(textwrap.wrap(msg, 72))
File "/usr/lib/python3.11/site-packages/_emerge/AbstractEbuildProcess.py", line 378, in _eerror
self._elog("eerror", lines)
File "/usr/lib/python3.11/site-packages/_emerge/AbstractEbuildProcess.py", line 396, in _elog
self.scheduler.output(msg, log_path=log_path)
File "/usr/lib/python3.11/site-packages/portage/util/_async/SchedulerInterface.py", line 107, in output
f = open(
^^^^^
OSError: [Errno 30] Read-only file system: b'/var/tmp/portage/dev-libs/mpfr-4.2.1/temp/build.log'
Complété
|
So, back to the same initial issue from the beginning!
[Errno 30] Read-only file system: b'/var/tmp/portage/dev-libs/mpfr-4.2.1/temp/build.log'
Enough of this, I've wasted too much time in trying to solve this issue: I give up!
So, backup config files required/needed/important and remove the Gentoo VMDK HDD and remove complete Gentoo VM.
I'll create a new one later, and I don't use EXT4 but BTRFS.
PS: All other VM's I've mentionned in first post works very well. |
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NeddySeagoon
Administrator
Joined: 05 Jul 2003
Posts: 54453
Location: 56N 3W
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| Posted: Tue Oct 03, 2023 8:25 am Post subject: |
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philoo,
If those bad blocks are real, the drive is scrap ... or a warranty return
On the host, run | Code: | | smartclt -x /dev/... |
and post the output.
From the outside looking in, you have bad blocks where the drive cannot read its own writing.
The smartclt -x output will show us the drives error log.
_________________
Regards,
NeddySeagoon
Computer users fall into two groups:-
those that do backups
those that have never had a hard drive fail. |
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Portage & Programming
