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alamahant
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Joined: 23 Mar 2019
Posts: 3879
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 Posted: Thu May 13, 2021 9:41 pm Post subject: cmake fails to build with undefined reference to glibc_2.33 |
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Hi guys i am getting this rather annoying error in a new install.
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/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libarchive.so: undefined reference to `fstatat@GLIBC_2.33'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libarchive.so: undefined reference to `lstat@GLIBC_2.33'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libarchive.so: undefined reference to `fstat@GLIBC_2.33'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libarchive.so: undefined reference to `stat@GLIBC_2.33'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libarchive.so: undefined reference to `mknod@GLIBC_2.33'
collect2: error: ld returned 1 exit status
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Here is my emerge info
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emerge --info =dev-util/cmake-3.18.5
Portage 3.0.18 (python 3.9.4-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r7, 5.12.1-gentoo x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-5.12.1-gentoo-x86_64-Intel-R-_Core-TM-_i7-4710HQ_CPU_@_2.50GHz-with-glibc2.32
KiB Mem: 16274776 total, 13709648 free
KiB Swap: 16773116 total, 16772860 free
Timestamp of repository gentoo: Thu, 13 May 2021 08:30:01 +0000
Head commit of repository gentoo: d9361b1475d60f4567db8e0f557d9778e5da8a4a
sh bash 5.0_p18
ld GNU ld (Gentoo 2.35.2 p1) 2.35.2
app-shells/bash: 5.0_p18::gentoo
dev-lang/perl: 5.30.3::gentoo
dev-lang/python: 3.8.9_p2::gentoo, 3.9.4_p1::gentoo
sys-apps/baselayout: 2.7::gentoo
sys-apps/openrc: 0.42.1-r1::gentoo
sys-apps/sandbox: 2.22::gentoo
sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake: 1.16.2-r1::gentoo
sys-devel/binutils: 2.35.2::gentoo
sys-devel/gcc: 10.2.0-r5::gentoo
sys-devel/gcc-config: 2.4::gentoo
sys-devel/libtool: 2.4.6-r6::gentoo
sys-devel/make: 4.3::gentoo
sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers)
sys-libs/glibc: 2.32-r7::gentoo
Repositories:
gentoo
location: /var/db/repos/gentoo
sync-type: rsync
sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage
priority: -1000
sync-rsync-extra-opts:
sync-rsync-verify-metamanifest: yes
sync-rsync-verify-max-age: 24
sync-rsync-verify-jobs: 1
lto-overlay
location: /var/lib/layman/lto-overlay
masters: gentoo mv
priority: 50
miramir
location: /var/lib/layman/miramir
masters: gentoo
priority: 50
mv
location: /var/lib/layman/mv
masters: gentoo
priority: 50
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--ask --quiet-build=y"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp/portage"
USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 libglvnd libtirpc multilib ncurses nls nptl openmp openssl pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 bmi bmi2 f16c fma fsgsbase movbe pclmul popcnt rdrnd sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_8 python3_9" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
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Any kind insights?
Thanks a lot......
I didnt see any related bug......
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Last edited by alamahant on Fri May 14, 2021 5:31 pm; edited 1 time in total |
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alamahant
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Joined: 23 Mar 2019
Posts: 3879
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| Posted: Thu May 13, 2021 11:22 pm Post subject: |
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I resolved this by upgrading glibc to ~arch or/and rebuilding binutils.
But this is abnormal ebuild behavior.
The Makefile of of stable "cmake" having references to unstable "glibc"....
I am opening a bug report.
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Ionen
Developer
Joined: 06 Dec 2018
Posts: 2723
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| Posted: Fri May 14, 2021 7:26 am Post subject: |
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Did you mix anything on that new install? Like binpkgs that were built with a newer glibc, copied files over, or anything you can think of (I see you already have a few overlays, I suspect you've done things with it).
This would happen if you had a package built with glibc-2.33 (that used those versioned symbols) and tried to link in its libraries using glibc-2.32 (aka effectively a glibc downgrade, which is not supported and not a bug unless the stage3 itself "somehow" had wrong files), this kind of stuff also happen with GLIBCXX symbol errors if you downgrade GCC for libstdc++ using packages. |
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alamahant
Advocate
Joined: 23 Mar 2019
Posts: 3879
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| Posted: Fri May 14, 2021 9:02 am Post subject: |
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Ionen,
Yes maybe a few binpkgs installed with "-k"(--usepkg).
You are a life savior.
But would not portage be smart enough to install appropriately?
I didnt force anything....
How should I find these binpkgs installed?
is it
?
It returns nothing in my case.
binpkgs is a recipe for disaster.
Apparently..
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Hu
Moderator
Joined: 06 Mar 2007
Posts: 21672
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| Posted: Fri May 14, 2021 3:36 pm Post subject: |
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| Binary packages are fine, if you use them consistently. If you mix binary packages from a remote host with locally built packages using different versions, then you can get in trouble. Ideally, yes, Portage should keep you out of this, but in practice, there are many ways to do this wrong, and you would need to have special handling for all of them. Some of them may only be solvable by Portage if it takes an aggressive approach of disallowing potentially unsafe things because it cannot prove them to be safe. |
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alamahant
Advocate
Joined: 23 Mar 2019
Posts: 3879
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| Posted: Fri May 14, 2021 5:30 pm Post subject: |
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Thanks for the Insight Hu.
No I want no part in binpkgs anymore.
Once burnt......
Thanks again both for your help.
I mark this as solved...
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