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[SOLVED] Emerge crash: Segmentation fault
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ralequi
n00b
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Joined: 06 Dec 2017
Posts: 3

PostPosted: Wed Dec 06, 2017 12:58 pm    Post subject: [SOLVED] Emerge crash: Segmentation fault Reply with quote

Hi everyone,

From my last update, my emerge crashed everytime I try to install / update something.

As an example:

Code:

emerge --update world
Calculating dependencies... done!

>>> Verifying ebuild manifests
Segmentation fault (core dumped)


What Linux says is:

Code:

[2071846.532452] traps: emerge[14074] general protection ip:7f7aa2c9cd39 sp:7fff560701a8 error:0 in pyblake2.cpython-34m.so[7f7aa2c98000+8000]
[2072023.441541] traps: emerge[15586] general protection ip:7fdffc3ddd39 sp:7fffb4e45128 error:0 in pyblake2.cpython-34m.so[7fdffc3d9000+8000]
[2072127.635857] traps: emerge[16425] general protection ip:7fc843db9d39 sp:7ffe3b8a6968 error:0 in pyblake2.cpython-34m.so[7fc843db5000+8000]
[2238646.060913] traps: emerge[29347] general protection ip:7ff0362e2d39 sp:7fff05c967a8 error:0 in pyblake2.cpython-34m.so[7ff0362de000+8000]
[2238824.819971] traps: emerge[30956] general protection ip:7f97df048d39 sp:7ffcaa123f48 error:0 in pyblake2.cpython-34m.so[7f97df044000+8000]
[2238900.766492] traps: emerge[31368] general protection ip:7f03adf40d39 sp:7ffe60466e48 error:0 in pyblake2.cpython-34m.so[7f03adf3c000+8000]



Emerge --info works:

Code:

emerge --info
Portage 2.3.13 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop/gnome/systemd, gcc-5.4.0, glibc-2.25-r9, 4.12.12-gentooHPCN x86_64)
=================================================================
System uname: Linux-4.12.12-gentooHPCN-x86_64-Intel-R-_Xeon-R-_CPU_E5-1650_v3_@_3.50GHz-with-gentoo-2.4.1
KiB Mem:    32910068 total,   6930740 free
KiB Swap:   12578888 total,  12578888 free
Timestamp of repository gentoo: Wed, 06 Dec 2017 12:30:01 +0000
Head commit of repository gentoo: 60e7c81311aa866b79f28b2e4eb91c18cdabc8ba
sh bash 4.3_p48-r1
ld GNU ld (Gentoo 2.28.1 p1.0) 2.28.1
app-shells/bash:          4.3_p48-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.3::gentoo
dev-lang/python:          2.7.14::gentoo, 3.4.5::gentoo
dev-util/cmake:           3.8.2::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.34.7::gentoo
sys-apps/sandbox:         2.10-r4::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.28.1::gentoo
sys-devel/gcc:            5.4.0-r3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r9::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts:

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -mtune=native -O3 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/chromium/policies/managed/chrome-gnome-shell.json /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/opt/chrome/policies/managed/chrome-gnome-shell.json /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -mtune=native -O3 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo-euetib.upc.es/mirror/gentoo/ rsync://ftp.rnl.tecnico.ulisboa.pt/pub/gentoo/gentoo-distfiles/ http://ftp.dei.uc.pt/pub/linux/gentoo/"
LANG="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j14"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 berkdb branding bzip2 cairo cdda cdr cli colord cracklib crypt cups cxx dbus dri dts dvd dvdr eds emboss encode evo exif fam firefox flac fortran gdbm gif glamor gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk iconv introspection ipv6 jpeg lcms ldap libnotify libsecret mad mng modules mp3 mp4 mpeg nautilus ncurses networkmanager nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds pulseaudio qt3support qt5 readline sdl seccomp session spell ssl startup-notification svg systemd tcpd threads tiff tracker truetype udev udisks unicode upower usb vorbis wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" L10N="en es" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="es es_ES en" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby22" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS



Any ideas that does not requiere a fully system reinstall?

Thank you guys.


Last edited by ralequi on Wed Dec 06, 2017 1:39 pm; edited 1 time in total
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fedeliallalinea
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Joined: 08 Mar 2003
Posts: 16884
Location: here

PostPosted: Wed Dec 06, 2017 1:02 pm    Post subject: Reply with quote

Welcome to the forum!
See here

Probably related to bug https://bugs.gentoo.org/638428
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ralequi
n00b
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Joined: 06 Dec 2017
Posts: 3

PostPosted: Wed Dec 06, 2017 1:14 pm    Post subject: Reply with quote

fedeliallalinea wrote:
Welcome to the forum!
See here

Probably related to bug https://bugs.gentoo.org/638428


It seems to be solved!
Thank you mate!

In summary for googlers:

Code:

emerge --unmerge pyblake2
emerge -1av =dev-python/pyblake2-0.9.3-r1
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