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Skirmitch
Apprentice
Joined: 15 Jun 2013
Posts: 207
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 Posted: Fri Apr 28, 2017 2:22 am Post subject: [SOLVED]Rstudio failed linking at the very end |
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Hey guys, compiling a masked version of Rstudio, it went awesomely but failed at the very end when linking. These are the last lines it output:
| Code: | [100%] Linking CXX executable rsession
cd /var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build/src/cpp/session && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsession.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -Wl,-z,relro,-z,now -Wl,-O1 -Wl,--as-needed CMakeFiles/rsession.dir/SessionAsyncRProcess.cpp.o CMakeFiles/rsession.dir/SessionClientEvent.cpp.o CMakeFiles/rsession.dir/SessionClientEventQueue.cpp.o CMakeFiles/rsession.dir/SessionClientEventService.cpp.o CMakeFiles/rsession.dir/SessionConsoleProcess.cpp.o CMakeFiles/rsession.dir/SessionContentUrls.cpp.o CMakeFiles/rsession.dir/SessionSSH.cpp.o CMakeFiles/rsession.dir/SessionMain.cpp.o CMakeFiles/rsession.dir/SessionMainOverlay.cpp.o CMakeFiles/rsession.dir/SessionModuleContext.cpp.o CMakeFiles/rsession.dir/SessionOptions.cpp.o CMakeFiles/rsession.dir/SessionOptionsOverlay.cpp.o CMakeFiles/rsession.dir/SessionPersistentState.cpp.o CMakeFiles/rsession.dir/SessionPostback.cpp.o CMakeFiles/rsession.dir/SessionRUtil.cpp.o CMakeFiles/rsession.dir/SessionSourceDatabase.cpp.o CMakeFiles/rsession.dir/SessionSourceDatabaseSupervisor.cpp.o CMakeFiles/rsession.dir/SessionUserSettings.cpp.o CMakeFiles/rsession.dir/SessionWorkerContext.cpp.o CMakeFiles/rsession.dir/http/SessionHttpConnectionQueue.cpp.o CMakeFiles/rsession.dir/http/SessionHttpConnectionUtils.cpp.o CMakeFiles/rsession.dir/modules/SessionAbout.cpp.o CMakeFiles/rsession.dir/modules/SessionAgreement.cpp.o CMakeFiles/rsession.dir/modules/SessionAskPass.cpp.o CMakeFiles/rsession.dir/modules/SessionAsyncPackageInformation.cpp.o CMakeFiles/rsession.dir/modules/SessionAuthoring.cpp.o CMakeFiles/rsession.dir/modules/SessionBreakpoints.cpp.o CMakeFiles/rsession.dir/modules/SessionCodeSearch.cpp.o CMakeFiles/rsession.dir/modules/SessionUserCommands.cpp.o CMakeFiles/rsession.dir/modules/SessionConsole.cpp.o CMakeFiles/rsession.dir/modules/SessionDependencies.cpp.o CMakeFiles/rsession.dir/modules/SessionDiagnostics.cpp.o CMakeFiles/rsession.dir/modules/SessionDirty.cpp.o CMakeFiles/rsession.dir/modules/SessionErrors.cpp.o CMakeFiles/rsession.dir/modules/SessionFiles.cpp.o CMakeFiles/rsession.dir/modules/SessionFilesListingMonitor.cpp.o CMakeFiles/rsession.dir/modules/SessionFilesQuotas.cpp.o CMakeFiles/rsession.dir/modules/SessionFind.cpp.o CMakeFiles/rsession.dir/modules/SessionGit.cpp.o CMakeFiles/rsession.dir/modules/SessionHelp.cpp.o CMakeFiles/rsession.dir/modules/SessionHelpHome.cpp.o CMakeFiles/rsession.dir/modules/SessionHistory.cpp.o CMakeFiles/rsession.dir/modules/SessionHistoryArchive.cpp.o CMakeFiles/rsession.dir/modules/SessionHTMLPreview.cpp.o CMakeFiles/rsession.dir/modules/SessionLimits.cpp.o CMakeFiles/rsession.dir/modules/SessionLists.cpp.o CMakeFiles/rsession.dir/modules/SessionMarkers.cpp.o CMakeFiles/rsession.dir/modules/SessionPackages.cpp.o CMakeFiles/rsession.dir/modules/SessionPackrat.cpp.o CMakeFiles/rsession.dir/modules/SessionPath.cpp.o CMakeFiles/rsession.dir/modules/SessionPlots.cpp.o CMakeFiles/rsession.dir/modules/SessionProfiler.cpp.o CMakeFiles/rsession.dir/modules/SessionRAddins.cpp.o CMakeFiles/rsession.dir/modules/SessionRCompletions.cpp.o CMakeFiles/rsession.dir/modules/SessionRHooks.cpp.o CMakeFiles/rsession.dir/modules/SessionRParser.cpp.o CMakeFiles/rsession.dir/modules/SessionRPubs.cpp.o CMakeFiles/rsession.dir/modules/SessionRSConnect.cpp.o CMakeFiles/rsession.dir/modules/SessionShinyViewer.cpp.o CMakeFiles/rsession.dir/modules/SessionSnippets.cpp.o CMakeFiles/rsession.dir/modules/SessionSource.cpp.o CMakeFiles/rsession.dir/modules/SessionSpelling.cpp.o CMakeFiles/rsession.dir/modules/SessionSVN.cpp.o CMakeFiles/rsession.dir/modules/SessionUpdates.cpp.o CMakeFiles/rsession.dir/modules/SessionVCS.cpp.o CMakeFiles/rsession.dir/modules/SessionWorkbench.cpp.o CMakeFiles/rsession.dir/modules/build/SessionBuild.cpp.o CMakeFiles/rsession.dir/modules/build/SessionBuildEnvironment.cpp.o CMakeFiles/rsession.dir/modules/build/SessionBuildErrors.cpp.o CMakeFiles/rsession.dir/modules/build/SessionSourceCpp.cpp.o CMakeFiles/rsession.dir/modules/clang/CodeCompletion.cpp.o CMakeFiles/rsession.dir/modules/clang/DefinitionIndex.cpp.o CMakeFiles/rsession.dir/modules/clang/Diagnostics.cpp.o CMakeFiles/rsession.dir/modules/clang/FindReferences.cpp.o CMakeFiles/rsession.dir/modules/clang/GoToDefinition.cpp.o CMakeFiles/rsession.dir/modules/clang/RCompilationDatabase.cpp.o CMakeFiles/rsession.dir/modules/clang/RSourceIndex.cpp.o CMakeFiles/rsession.dir/modules/clang/SessionClang.cpp.o CMakeFiles/rsession.dir/modules/connections/ActiveConnections.cpp.o CMakeFiles/rsession.dir/modules/connections/Connection.cpp.o CMakeFiles/rsession.dir/modules/connections/ConnectionHistory.cpp.o CMakeFiles/rsession.dir/modules/connections/SessionConnections.cpp.o CMakeFiles/rsession.dir/modules/data/SessionData.cpp.o CMakeFiles/rsession.dir/modules/data/DataViewer.cpp.o CMakeFiles/rsession.dir/modules/environment/EnvironmentMonitor.cpp.o CMakeFiles/rsession.dir/modules/environment/EnvironmentUtils.cpp.o CMakeFiles/rsession.dir/modules/environment/SessionEnvironment.cpp.o CMakeFiles/rsession.dir/modules/mathjax/SessionMathJax.cpp.o CMakeFiles/rsession.dir/modules/overlay/SessionOverlay.cpp.o CMakeFiles/rsession.dir/modules/presentation/SessionPresentation.cpp.o CMakeFiles/rsession.dir/modules/presentation/PresentationLog.cpp.o CMakeFiles/rsession.dir/modules/presentation/PresentationState.cpp.o CMakeFiles/rsession.dir/modules/presentation/SlideMediaRenderer.cpp.o CMakeFiles/rsession.dir/modules/presentation/SlideNavigationList.cpp.o CMakeFiles/rsession.dir/modules/presentation/SlideParser.cpp.o CMakeFiles/rsession.dir/modules/presentation/SlideQuizRenderer.cpp.o CMakeFiles/rsession.dir/modules/presentation/SlideRenderer.cpp.o CMakeFiles/rsession.dir/modules/presentation/SlideRequestHandler.cpp.o CMakeFiles/rsession.dir/modules/presentation/Tutorial.cpp.o CMakeFiles/rsession.dir/modules/presentation/TutorialInstaller.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/SessionRMarkdown.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/SessionRmdNotebook.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/SessionExecuteChunkOperation.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookAlternateEngines.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookCache.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookCapture.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookChunkDefs.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookChunkOptions.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookConditions.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookData.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookDocQueue.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookErrors.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookExec.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookHtmlWidgets.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookOutput.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookPaths.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookPlotReplay.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookPlots.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookQueue.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookQueueUnit.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/NotebookWorkingDir.cpp.o CMakeFiles/rsession.dir/modules/rmarkdown/RMarkdownPresentation.cpp.o CMakeFiles/rsession.dir/modules/shiny/SessionShiny.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionCompilePdf.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionCompilePdfSupervisor.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionPdfLatex.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionRnwConcordance.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionRnwWeave.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionSynctex.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionTexUtils.cpp.o CMakeFiles/rsession.dir/modules/tex/SessionViewPdf.cpp.o CMakeFiles/rsession.dir/modules/vcs/SessionVCSCore.cpp.o CMakeFiles/rsession.dir/modules/vcs/SessionVCSUtils.cpp.o CMakeFiles/rsession.dir/modules/viewer/SessionViewer.cpp.o CMakeFiles/rsession.dir/modules/viewer/ViewerHistory.cpp.o CMakeFiles/rsession.dir/projects/SessionProjects.cpp.o CMakeFiles/rsession.dir/projects/SessionProjectContext.cpp.o CMakeFiles/rsession.dir/projects/SessionProjectFirstRun.cpp.o CMakeFiles/rsession.dir/SessionAddins.cpp.o CMakeFiles/rsession.dir/http/SessionPosixHttpConnectionListener.cpp.o -o rsession -L/usr/lib64/R/lib -Wl,-rpath,/usr/lib64/R/lib: -rdynamic ../core/librstudio-core.a ../core/spelling/hunspell/librstudio-core-hunspell.a ../core/tex/synctex/librstudio-core-synctex.a ../monitor/librstudio-monitor.a ../r/librstudio-r.a workers/librstudio-session-workers.a -lR -ldl ../core/librstudio-core.a -lboost_date_time-mt -lboost_filesystem-mt -lboost_iostreams-mt -lboost_program_options-mt -lboost_regex-mt -lboost_signals-mt -lboost_system-mt -lboost_thread-mt -lboost_chrono-mt -lboost_atomic-mt -lpthread -lutil -luuid -lrt -lz
make[2]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build'
[100%] Built target rsession
make[1]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build'
make: *** [Makefile:150: all] Error 2
* ERROR: sci-mathematics/rstudio-1.0.44::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-1.0.44::gentoo'`,
* the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-1.0.44::gentoo'`.
* The complete build log is located at '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/temp/environment'.
* Working directory: '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build'
* S: '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44'
!!! When you file a bug report, please include the following information:
GENTOO_VM=oracle-jdk-bin-1.8 CLASSPATH="" JAVA_HOME="/opt/oracle-jdk-bin-1.8.0.131"
JAVACFLAGS="-source 1.8 -target 1.8" COMPILER=""
and of course, the output of emerge --info =rstudio-1.0.44
>>> Failed to emerge sci-mathematics/rstudio-1.0.44, Log file:
>>> '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/temp/build.log'
* Messages for package dev-lang/ghc-7.10.3:
* Final mk/build.mk:
* Messages for package sci-mathematics/rstudio-1.0.44:
* ERROR: sci-mathematics/rstudio-1.0.44::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-1.0.44::gentoo'`,
* the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-1.0.44::gentoo'`.
* The complete build log is located at '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/temp/environment'.
* Working directory: '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build'
* S: '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44'
* GNU info directory index is up-to-date.
|
And as it says in the code, this is the info it requests:
| Code: | aranza skirmitch # emerge --info '=sci-mathematics/rstudio-1.0.44::gentoo'
Portage 2.3.3 (python 2.7.12-final-0, default/linux/amd64/13.0/desktop/gnome/systemd, gcc-5.4.0, glibc-2.23-r3, 4.9.16-gentoo x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-4.9.16-gentoo-x86_64-Intel-R-_Core-TM-_i7-4700HQ_CPU_@_2.40GHz-with-gentoo-2.3
KiB Mem: 12195992 total, 6119148 free
KiB Swap: 4218872 total, 4186896 free
Timestamp of repository gentoo: Thu, 27 Apr 2017 16:45:01 +0000
sh bash 4.3_p48-r1
ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1
app-shells/bash: 4.3_p48-r1::gentoo
dev-java/java-config: 2.2.0-r3::gentoo
dev-lang/perl: 5.24.1-r1::gentoo
dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake: 3.7.2::gentoo
dev-util/pkgconfig: 0.28-r2::gentoo
sys-apps/baselayout: 2.3::gentoo
sys-apps/openrc: 0.24.2::gentoo
sys-apps/sandbox: 2.10-r3::gentoo
sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo
sys-devel/automake: 1.11.6-r1::gentoo, 1.15::gentoo
sys-devel/binutils: 2.26.1::gentoo
sys-devel/gcc: 4.8.5::gentoo, 5.4.0-r3::gentoo
sys-devel/gcc-config: 1.7.3::gentoo
sys-devel/libtool: 2.4.6-r3::gentoo
sys-devel/make: 4.2.1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc: 2.23-r3::gentoo
Repositories:
gentoo
location: /usr/portage
sync-type: rsync
sync-uri: rsync://rsync24.us.gentoo.org/gentoo-portage/
priority: -1000
MSP430
location: /usr/local/portage-crossdev
masters: gentoo
priority: 0
eclipse
location: /var/lib/layman/eclipse
masters: gentoo
priority: 50
gamerlay
location: /var/lib/layman/gamerlay
masters: gentoo
priority: 50
jorgicio
location: /var/lib/layman/jorgicio
masters: gentoo
priority: 50
qt
location: /var/lib/layman/qt
masters: gentoo
priority: 50
sublime-text
location: /var/lib/layman/sublime-text
masters: gentoo
priority: 50
vaca
location: /var/lib/layman/vaca
masters: gentoo
priority: 50
vmware
location: /var/lib/layman/vmware
masters: gentoo
priority: 50
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/chromium/policies/managed/chrome-gnome-shell.json /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/opt/chrome/policies/managed/chrome-gnome-shell.json /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j7"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 android apache2 berkdb bluetooth branding bzip2 cairo cdda cdr cjk clang cli colord cracklib crypt cuda cups cxx dbus doc dri dts dvd dvdr eds emboss encode evo examples exif fam firefox flac fontconfig fortran freerdp gdal gdbm geos gif gimp glamor gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk hpcups iconv icu immqt-bc introspection iodbc ipafont ipv6 java jpeg lcms ldap libass libnotify libsecret lm_sensors mad mmx mng modules mp3 mp4 mpeg multilib multislot mysql nautilus ncurses nls nptl nsplugin nvidia ogg opengl openmp pam pango pcre pdf php5 png policykit ppds proj pulseaudio python qt3support qt4 qt5 readline resolvconf samba sdl seccomp session snmp spell sse sse2 ssl startup-notification svg symlink systemd tcpd tidy tiff tinfo tracker truetype udev udisks unicode upower usb vorbis webstart wifi winbind wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="ja es es_LA en" OFFICE_IMPLEMENTATION="libreoffice" PYTHON_SINGLE_TARGET="python3_4 pypy" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby21 ruby22" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON |
Any help is welcomed. I thought it would be easy to fix since its so at the end but I couldnt figure out the problem since it didnt give any clues I could understand in the falure =(
Last edited by Skirmitch on Fri Apr 28, 2017 6:26 pm; edited 1 time in total |
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fedeliallalinea
Administrator
Joined: 08 Mar 2003
Posts: 30909
Location: here
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| Posted: Fri Apr 28, 2017 5:58 am Post subject: |
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I don't see any errors on these lines, you should post full build.log with wgetpaste
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Skirmitch
Apprentice
Joined: 15 Jun 2013
Posts: 207
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| Posted: Fri Apr 28, 2017 6:41 am Post subject: |
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| fedeliallalinea wrote: | | I don't see any errors on these lines, you should post full build.log with wgetpaste |
Ah, I couldn't find any either but I thought I just couldn't see it, I didn't think it could be before those lines. Here is the full output
https://paste.pound-python.org/show/WFHSyYOxQMNLhj3WDz47/ |
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Skirmitch
Apprentice
Joined: 15 Jun 2013
Posts: 207
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| Posted: Fri Apr 28, 2017 6:44 am Post subject: |
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Checking the whole build I found this error and some warnings about boost signal
| Code: | cd /var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build/src/cpp/session && /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ASIO_DISABLE_KQUEUE -DBOOST_ENABLE_ASSERT_HANDLER -D_FORTIFY_SOURCE=2 -I/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44/src/cpp/session/include -I/usr/lib64/R/include -I/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44/src/cpp/core/include -I/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44/src/cpp/monitor/include -I/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44/src/cpp/r/include -I/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build/src/cpp/session -I/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44/src/cpp/tests/cpp -DNDEBUG -march=native -O2 -pipe -Wall -pthread -Wformat -Wformat-security -fstack-protector --param ssp-buffer-size=4 -pie -fPIE -o CMakeFiles/rsession.dir/SessionOptions.cpp.o -c /var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44/src/cpp/session/SessionOptions.cpp
[01m[K<command-line>:0:0:[m[K [01;35m[Kwarning: [m[K"_FORTIFY_SOURCE" redefined
[01m[K<built-in>:[m[K [01;36m[Knote: [m[Kthis is the location of the previous definition
/usr/lib64/libQt5WebKit.so.5.6.2: undefined reference to `leveldb::DestroyDB(std::string const&, leveldb::Options const&)'
/usr/lib64/libQt5WebKit.so.5.6.2: undefined reference to `leveldb::DB::Open(leveldb::Options const&, std::string const&, leveldb::DB**)'
collect2: error: ld returned 1 exit status
make[2]: *** [src/cpp/desktop/CMakeFiles/rstudio.dir/build.make:1853: src/cpp/desktop/rstudio] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.0.44/work/rstudio-1.0.44_build'
make[1]: *** [CMakeFiles/Makefile2:530: src/cpp/desktop/CMakeFiles/rstudio.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs.... |
But I still don't understand how to fix it. The only clue I find is to rebuild qt5webkit, will do that while u check the log |
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fedeliallalinea
Administrator
Joined: 08 Mar 2003
Posts: 30909
Location: here
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| Posted: Fri Apr 28, 2017 6:55 am Post subject: |
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Try to rebuild leveldb (see here)
| Code: | | # emerge -1 leveldb |
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Skirmitch
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Joined: 15 Jun 2013
Posts: 207
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| Posted: Fri Apr 28, 2017 7:11 am Post subject: |
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Did it and failed again tho I didnt rebuild qtwebkit, do u think it failed cuz I didnt rebuild the webkit? I didnt understand if it was necessary or not. Here is the new build log
https://paste.pound-python.org/show/ohekqWWmiEyCVgJNfV74/
(note: I compiled it inside a folder that doesnt exist, thats why the errors at the beginning) |
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fedeliallalinea
Administrator
Joined: 08 Mar 2003
Posts: 30909
Location: here
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| Posted: Fri Apr 28, 2017 7:14 am Post subject: |
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At this point try also to rebuild qwebkit:5
| Code: | | # emerge -1 qtwebkit:5 |
_________________
Questions are guaranteed in life; Answers aren't. |
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Skirmitch
Apprentice
Joined: 15 Jun 2013
Posts: 207
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| Posted: Fri Apr 28, 2017 6:26 pm Post subject: |
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| Rebuilding the webkit ended up solving everything. Thnks a lot for the help. |
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rsa4046
l33t
Joined: 07 Feb 2005
Posts: 660
Location: The Big H, a bit SSW
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| Posted: Wed Jun 14, 2017 8:35 am Post subject: |
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| Identical problem as Skirmitch described here, rebuilding as fedeliallalinea advised above got everything to roll. Many thanks. |
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slackline
Veteran
Joined: 01 Apr 2005
Posts: 1471
Location: /uk/sheffield
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| Posted: Tue Jun 27, 2017 5:58 am Post subject: |
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I've encountered errors building the newer =sci-mathematics/rstudio-1.0.143. I've tried emerge of leveldb and qtwebkit:5 as suggested and build seems to complete, but but still get the following fail.
| Code: |
[ 58%] Linking CXX executable rstudio
cd /var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143_build/src/cpp/desktop && /usr/bin/cmake -E cmake_link_script CMakeFiles/rstudio.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-g++ -O2 -march=native -pipe
-Wl,-z,relro,-z,now -Wl,-O1 -Wl,--as-needed -rdynamic
CMakeFiles/rstudio.dir/DesktopAboutDialog.cpp.o
CMakeFiles/rstudio.dir/DesktopBrowserWindow.cpp.o
CMakeFiles/rstudio.dir/DesktopCommandInvoker.cpp.o
CMakeFiles/rstudio.dir/DesktopDataUriNetworkReply.cpp.o
CMakeFiles/rstudio.dir/DesktopDownloadHelper.cpp.o
CMakeFiles/rstudio.dir/DesktopGwtCallback.cpp.o
CMakeFiles/rstudio.dir/DesktopGwtWindow.cpp.o
CMakeFiles/rstudio.dir/DesktopInputDialog.cpp.o
CMakeFiles/rstudio.dir/DesktopMain.cpp.o
CMakeFiles/rstudio.dir/DesktopMainWindow.cpp.o
CMakeFiles/rstudio.dir/DesktopMenuCallback.cpp.o
CMakeFiles/rstudio.dir/DesktopNetworkIOService.cpp.o
CMakeFiles/rstudio.dir/DesktopNetworkReply.cpp.o
CMakeFiles/rstudio.dir/DesktopNetworkProxyFactory.cpp.o
CMakeFiles/rstudio.dir/DesktopOptions.cpp.o
CMakeFiles/rstudio.dir/DesktopURLDownloader.cpp.o
CMakeFiles/rstudio.dir/DesktopUtils.cpp.o
CMakeFiles/rstudio.dir/DesktopWebPage.cpp.o
CMakeFiles/rstudio.dir/DesktopWebView.cpp.o
CMakeFiles/rstudio.dir/DesktopWindowTracker.cpp.o
CMakeFiles/rstudio.dir/DesktopSatelliteWindow.cpp.o
CMakeFiles/rstudio.dir/DesktopSecondaryWindow.cpp.o
CMakeFiles/rstudio.dir/DesktopSessionLauncher.cpp.o
CMakeFiles/rstudio.dir/DesktopSlotBinders.cpp.o
CMakeFiles/rstudio.dir/DesktopSubMenu.cpp.o
CMakeFiles/rstudio.dir/DesktopSynctex.cpp.o
CMakeFiles/rstudio.dir/DesktopNetworkAccessManager.cpp.o
CMakeFiles/rstudio.dir/DesktopPosixApplication.cpp.o
CMakeFiles/rstudio.dir/DesktopPosixApplicationLaunch.cpp.o
CMakeFiles/rstudio.dir/DesktopPosixDetectRHome.cpp.o
CMakeFiles/rstudio.dir/synctex/evince/EvinceDaemon.cpp.o
CMakeFiles/rstudio.dir/synctex/evince/EvinceSynctex.cpp.o
CMakeFiles/rstudio.dir/synctex/evince/EvinceWindow.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopAboutDialog.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopApplicationLaunch.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopBrowserWindow.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopCommandInvoker.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopDataUriNetworkReply.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopDownloadHelper.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopGwtCallback.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopGwtWindow.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopInputDialog.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopMainWindow.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopMenuCallback.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopNetworkAccessManager.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopNetworkReply.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopPosixApplication.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopSatelliteWindow.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopSecondaryWindow.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopSessionLauncher.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopSlotBinders.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopSubMenu.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopSynctex.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopURLDownloader.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopWebPage.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopWebView.cpp.o
CMakeFiles/rstudio.dir/moc_DesktopWindowTracker.cpp.o
CMakeFiles/rstudio.dir/qt-patch/mac-colorspace/moc_qpaintengine_mac_p
.cpp.o CMakeFiles/rstudio.dir/synctex/evince/moc_EvinceDaemon.cpp.o
CMakeFiles/rstudio.dir/synctex/evince/moc_EvinceSynctex.cpp.o
CMakeFiles/rstudio.dir/synctex/evince/moc_EvinceWindow.cpp.o
CMakeFiles/rstudio.dir/qrc_desktop.cpp.o -o rstudio
/usr/lib64/libQt5WebKitWidgets.so.5.7.1
/usr/lib64/libQt5PrintSupport.so.5.7.1
/usr/lib64/libQt5Quick.so.5.7.1 /usr/lib64/libQt5Positioning.so.5.7.1
/usr/lib64/libQt5Sensors.so.5.7.1 /usr/lib64/libQt5Svg.so.5.7.1
/usr/lib64/libQt5Xml.so.5.7.1 /usr/lib64/libQt5XmlPatterns.so.5.7.1
/usr/lib64/libQt5Qml.so.5.7.1 /usr/lib64/libQt5Sql.so.5.7.1
/usr/lib64/libQt5OpenGL.so.5.7.1 /usr/lib64/libQt5DBus.so.5.7.1
-lQt5Solutions_SingleApplication-2.6 ../core/librstudio-core.a
/usr/lib64/libQt5WebKit.so.5.7.1 /usr/lib64/libQt5Network.so.5.7.1
/usr/lib64/libQt5Widgets.so.5.7.1 /usr/lib64/libQt5Gui.so.5.7.1
/usr/lib64/libQt5Core.so.5.7.1 -lboost_date_time-mt
-lboost_filesystem-mt -lboost_iostreams-mt -lboost_program_options-mt
-lboost_regex-mt -lboost_signals-mt -lboost_system-mt
-lboost_thread-mt -lboost_chrono-mt -lboost_atomic-mt -lpthread
-lutil -luuid -lrt -lz -lssl -lcrypto -lpam -ldl
make[2]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143_build'
[ 58%] Built target rstudio
[java] Compiling 4 permutations
[java] Compiling permutation 0...
[java] Process output
[java] Compiling
[java] Compiling permutation 1...
[java] Compiling
[java] Compiling permutation 2...
[java] Compiling permutation 3...
[java] Compile of permutations succeeded
[java] Compilation succeeded -- 135.439s
[java] Linking into
/var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143
/src/gwt/www/rstudio; Writing extras to
/var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143
/src/gwt/extras/rstudio
[java] Link succeeded
[java] Linking succeeded -- 0.952s
build:
BUILD SUCCESSFUL
Total time: 2 minutes 49 seconds
make[2]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143_build'
[ 58%] Built target gwt_build
make[1]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143_build'
make: *** [Makefile:152: all] Error 2
* ERROR: sci-mathematics/rstudio-1.0.143::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-1.0.143::gentoo'`,
* the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-1.0.143::gentoo'`.
* The complete build log is located at '/var/tmp/portage/sci-mathematics/rstudio-1.0.143/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-1.0.143/temp/environment'.
* Working directory: '/var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143_build'
* S: '/var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143'
!!! When you file a bug report, please include the following information:
GENTOO_VM=oracle-jdk-bin-1.8 CLASSPATH="" JAVA_HOME="/opt/oracle-jdk-bin-1.8.0.131"
JAVACFLAGS="-source 1.8 -target 1.8" COMPILER=""
and of course, the output of emerge --info =rstudio-1.0.143
|
Requested emerge --info =rstudio-1.0.143...
| Code: |
# emerge --info =sci-mathematics/rstudio-1.0.143
Portage 2.3.6 (python 3.4.6-final-0, default/linux/amd64/13.0/no-multilib, gcc-6.3.0, glibc-2.24-r3, 4.11.7-gentoo x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-4.11.7-gentoo-x86_64-Intel-R-_Core-TM-_i7-6700_CPU_@_3.40GHz-with-gentoo-2.4.1
KiB Mem: 32782832 total, 17648936 free
KiB Swap: 8000364 total, 8000364 free
Timestamp of repository gentoo: Tue, 27 Jun 2017 05:30:01 +0000
sh bash 4.4_p12
ld GNU ld (Gentoo 2.27 p1.1) 2.27
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
ccache version 3.3.4 [disabled]
app-shells/bash: 4.4_p12::gentoo
dev-java/java-config: 2.2.0-r3::gentoo
dev-lang/perl: 5.24.1-r2::gentoo
dev-lang/python: 2.7.13::gentoo, 3.4.6::gentoo, 3.6.1-r1::gentoo
dev-util/ccache: 3.3.4::gentoo
dev-util/cmake: 3.8.2::gentoo
dev-util/pkgconfig: 0.29.2::gentoo
sys-apps/baselayout: 2.4.1::gentoo
sys-apps/openrc: 0.27.2::gentoo
sys-apps/sandbox: 2.10-r4::gentoo
sys-devel/autoconf: 2.13::gentoo, 2.69-r3::gentoo
sys-devel/automake: 1.4_p6-r2::gentoo, 1.11.6-r2::gentoo, 1.15.1::gentoo
sys-devel/binutils: 2.27-r1::gentoo, 2.28-r2::gentoo
sys-devel/gcc: 6.3.0::gentoo
sys-devel/gcc-config: 1.8-r1::gentoo
sys-devel/libtool: 2.4.6-r4::gentoo
sys-devel/make: 4.2.1-r1::gentoo
sys-kernel/linux-headers: 4.10::gentoo (virtual/os-headers)
sys-libs/glibc: 2.24-r3::gentoo
Repositories:
gentoo
location: /usr/portage
sync-type: rsync
sync-uri: rsync://rsync.gentoo.org/gentoo-portage
priority: -1000
Personal-overlay
location: /usr/portage/local
masters: gentoo
priority: 0
andy
location: /var/lib/layman/andy
masters: gentoo
priority: 50
emacs
location: /var/lib/layman/emacs
masters: gentoo
priority: 50
fkmclane
location: /var/lib/layman/fkmclane
masters: gentoo
priority: 50
torbrowser
location: /var/lib/layman/torbrowser
masters: gentoo
priority: 50
ABI="amd64"
ABI_X86="64"
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
ACCEPT_PROPERTIES="*"
ACCEPT_RESTRICT="*"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ANT_HOME="/usr/share/ant"
APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias"
ARCH="amd64"
AUTOCLEAN="yes"
BOOTSTRAP_USE="cxx unicode internal-glib python_targets_python3_4 python_targets_python2_7 multilib"
CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CFLAGS_amd64="-m64"
CFLAGS_x32="-mx32"
CFLAGS_x86="-m32"
CHOST="x86_64-pc-linux-gnu"
CHOST_amd64="x86_64-pc-linux-gnu"
CHOST_x32="x86_64-pc-linux-gnux32"
CHOST_x86="i686-pc-linux-gnu"
CLEAN_DELAY="5"
COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
COLLISION_IGNORE="/lib/modules/* *.py[co] *$py.class */dropin.cache"
COLORTERM="truecolor"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.1/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3"
CXXFLAGS="-O2 -march=native -pipe"
DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-c1pIwXPRpm,guid=4400feebc6cebb7999865ad15951d331"
DCC_EMAILLOG_WHOM_TO_BLAME=""
DEFAULT_ABI="amd64"
DESKTOP_SESSION="xfce"
DISPLAY=":0.0"
DISTCC_ENABLE_DISCREPANCY_EMAIL=""
DISTCC_FALLBACK="1"
DISTCC_SAVE_TEMPS="0"
DISTCC_SSH=""
DISTCC_TCP_CORK=""
DISTCC_VERBOSE="0"
DISTDIR="/usr/portage/distfiles"
EDITOR="/bin/nano"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS="--alphabetical --keep-going --quiet --verbose --with-bdeps=y"
EMERGE_WARNING_DELAY="10"
EPREFIX=""
EROOT="/"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FETCHCOMMAND="wget -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
FETCHCOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
FETCHCOMMAND_SFTP="bash -c "x=\${2#sftp://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port= ; eval \"declare -a ssh_opts=(\${3})\" ; exec sftp \${port:+-P \${port}} \"\${ssh_opts[@]}\" \"\${host}:/\${x#*/}\" \"\$1\"" sftp "${DISTDIR}/${FILE}" "${URI}" "${PORTAGE_SSH_OPTS}""
FETCHCOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port= ; exec rsync --rsh=\"ssh \${port:+-p\${port}} \${3}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}" "${PORTAGE_SSH_OPTS}""
FFLAGS="-O2 -pipe"
GCC_SPECS=""
GENTOO_MIRRORS="http://www.mirrorservice.org/sites/distfiles.gentoo.org/ http://distfiles.gentoo.org/"
GLADE_CATALOG_PATH=":"
GLADE_MODULE_PATH=":"
GLADE_PIXMAP_PATH=":"
GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx"
GRUB_PLATFORMS=""
GSETTINGS_BACKEND="dconf"
GTK_MODULES="canberra-gtk-module"
HISTCONTROL="erasedups"
HOME="/root"
INFOPATH="/usr/share/gcc-data/x86_64-pc-linux-gnu/6.3.0/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.27/info:/usr/share/info:/usr/share/info/emacs-24"
INPUT_DEVICES="keyboard mouse evdev virtualbox"
IPLAYER_OUTDIR="~/video/iplayer/"
IUSE_IMPLICIT="abi_x86_64 prefix prefix-chain prefix-guest"
JAVAC="/etc/java-config-2/current-system-vm/bin/javac"
JAVA_HOME="/etc/java-config-2/current-system-vm"
JDK_HOME="/etc/java-config-2/current-system-vm"
KERNEL="linux"
L10N="en_GB"
LANG="en_GB.utf8"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LC_MESSAGES="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LDFLAGS_amd64="-m elf_x86_64"
LDFLAGS_x32="-m elf32_x86_64"
LDFLAGS_x86="-m elf_i386"
LESS="-R -M --shift 5"
LESSOPEN="|lesspipe %s"
LIBDIR_amd64="lib64"
LIBDIR_x32="libx32"
LIBDIR_x86="lib32"
LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer"
LINGUAS="en_GB"
LOGNAME="root"
LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd
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ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36
:*.xspf=00;36:"
MAIL="/var/mail/neil"
MAKEOPTS="-j8"
MANPATH="/etc/java-config-2/current-system-vm/man:/usr/share/gcc-data
/x86_64-pc-linux-gnu/6.3.0/man:/usr/share/binutils-data/x86_64-pc-
linux-gnu/2.27/man:/usr/lib/llvm/4/share/man:/etc/java-config-2/
current-system-vm/man/:/usr/lib64/php7.1/man/:/usr/local/share/man:/
usr/share/man:/usr/share/rust-1.16.0/man"
MOZ_GMP_PATH="/usr/lib64/nsbrowser/plugins/gmp-gmpopenh264/system-installed"
MOZ_USE_OMTC="1"
MULTILIB_ABIS="amd64"
MULTILIB_STRICT_DENY="64-bit.*shared object"
MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib"
MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage|udev|systemd|clang|python-exec|llvm)"
NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml"
OFFICE_IMPLEMENTATION="libreoffice"
OPENCL_PROFILE="intel"
OPENGL_PROFILE="xorg-x11"
PAGER="/usr/bin/less"
PATH="~/bin/:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/stata/"
PHP_TARGETS="php5-6"
PKGDIR="/usr/portage/packages"
PORTAGE_ARCHLIST="alpha amd64 amd64-fbsd amd64-linux arm arm-linux arm64 arm64-linux hppa ia64 m68k m68k-mint mips nios2 ppc ppc-aix ppc-macos ppc64 ppc64-linux riscv s390 sh sparc sparc-fbsd sparc-solaris sparc64-solaris x64-cygwin x64-macos x64-solaris x86 x86-cygwin x86-fbsd x86-linux x86-macos x86-solaris x86-winnt"
PORTAGE_BIN_PATH="/usr/lib/portage/python3.4"
PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png"
PORTAGE_CONFIGROOT="/"
PORTAGE_DEBUG="0"
PORTAGE_DEPCACHEDIR="/var/cache/edb/dep"
PORTAGE_ELOG_CLASSES="log warn error"
PORTAGE_ELOG_MAILFROM="portage@localhost"
PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}"
PORTAGE_ELOG_MAILURI="root"
PORTAGE_ELOG_SYSTEM="save_summary:log,warn,error,qa echo"
PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5"
PORTAGE_FETCH_RESUME_MIN_SIZE="350K"
PORTAGE_GID="250"
PORTAGE_GPG_SIGNING_COMMAND="gpg --sign --digest-algo SHA256 --clearsign --yes --default-key "${PORTAGE_GPG_KEY}" --homedir "${PORTAGE_GPG_DIR}" "${FILE}""
PORTAGE_INST_GID="0"
PORTAGE_INST_UID="0"
PORTAGE_INTERNAL_CALLER="1"
PORTAGE_OVERRIDE_EPREFIX=""
PORTAGE_PYM_PATH="/usr/lib64/python3.4/site-packages"
PORTAGE_PYTHONPATH="/usr/lib64/python3.4/site-packages"
PORTAGE_QUIET="1"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_RSYNC_RETRIES="-1"
PORTAGE_SYNC_STALE="30"
PORTAGE_TMPDIR="/var/tmp"
PORTAGE_VERBOSE="1"
PORTAGE_WORKDIR_MODE="0700"
PORTAGE_XATTR_EXCLUDE="btrfs.* security.evm security.ima security.selinux system.nfs4_acl"
PORT_LOGDIR_CLEAN="find "${PORT_LOGDIR}" -type f ! -name "summary.log*" -mtime +7 -delete"
PRELINK_PATH_MASK="/usr/lib64/klibc"
PROFILE_ONLY_VARIABLES="ARCH ELIBC IUSE_IMPLICIT KERNEL USERLAND USE_EXPAND_IMPLICIT USE_EXPAND_UNPREFIXED USE_EXPAND_VALUES_ARCH USE_EXPAND_VALUES_ELIBC USE_EXPAND_VALUES_KERNEL USE_EXPAND_VALUES_USERLAND"
PWD="/home/neil"
PYTHONDONTWRITEBYTECODE="1"
PYTHON_SINGLE_TARGET="python3_4"
PYTHON_TARGETS="python2_7 python3_4"
QT_GRAPHICSSYSTEM="raster"
RESUMECOMMAND="wget -c -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
RESUMECOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
RESUMECOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port= ; exec rsync --rsh=\"ssh \${port:+-p\${port}} \${3}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}" "${PORTAGE_SSH_OPTS}""
ROOT="/"
ROOTPATH="/usr/x86_64-pc-linux-gnu/gcc-bin/6.3.0:/usr/lib/llvm/4/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin"
RPMDIR="/usr/portage/rpm"
RUBY_TARGETS="ruby24"
R_HOME="/usr/lib64/R"
SESSION_MANAGER="local/kimura:@/tmp/.ICE-unix/4683,unix/kimura:/tmp/.ICE-unix/4683"
SHELL="/bin/bash"
SHLVL="4"
SSH_AGENT_PID="4512"
SSH_ASKPASS="/usr/bin/ssh-askpass-fullscreen"
SSH_AUTH_SOCK="/tmp/ssh-R01vkmjCvaHY/agent.4511"
SYMLINK_LIB="yes"
TERM="xterm-256color"
TWISTED_DISABLE_WRITING_OF_PLUGIN_CACHE="1"
UNCACHED_ERR_FD=""
UNINSTALL_IGNORE="/lib/modules/* /var/run /var/lock"
USE="X a52 aac acl acpi alsa amd64 apm bash-completion berkdb branding bzip2 cdda cddb cdr cli cracklib crypt cups cxx dbus device-mapper dri dvd dvdr emacs exif ffmpeg flac fortran gdbm gif gimp glitz gtk gtk3 iconv icu id3tag ipv6 jpeg kpathsea lensfun libsexy lock modules mp3 mpeg ncurses nls nptl nsplugin ntp nvidia offensive ogg opengl openmp oss pam pcre pdf perl png policykit pulseaudio python qt5 raw readline scanner seccomp session spell sqlite3 ssh ssl svg tcpd thunar tiff truetype udev unicode usb vorbis win32codecs x264 xattr xcb xinetd xulrunner xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev virtualbox" KERNEL="linux" L10N="en_GB" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USER="root"
USERLAND="GNU"
USE_EXPAND="ABI_MIPS ABI_PPC ABI_S390 ABI_X86 ALSA_CARDS APACHE2_MODULES APACHE2_MPMS CALLIGRA_EXPERIMENTAL_FEATURES CALLIGRA_FEATURES CAMERAS COLLECTD_PLUGINS CPU_FLAGS_ARM CPU_FLAGS_X86 CROSSCOMPILE_OPTS CURL_SSL ELIBC ENLIGHTENMENT_MODULES FFTOOLS GPSD_PROTOCOLS GRUB_PLATFORMS INPUT_DEVICES KERNEL L10N LCD_DEVICES LIBREOFFICE_EXTENSIONS LINGUAS LIRC_DEVICES LLVM_TARGETS MONKEYD_PLUGINS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL NGINX_MODULES_STREAM OFED_DRIVERS OFFICE_IMPLEMENTATION OPENMPI_FABRICS OPENMPI_OFED_FEATURES OPENMPI_RM PHP_TARGETS PYTHON_SINGLE_TARGET PYTHON_TARGETS QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS ROS_MESSAGES RUBY_TARGETS SANE_BACKENDS USERLAND UWSGI_PLUGINS VIDEO_CARDS VOICEMAIL_STORAGE XFCE_PLUGINS XTABLES_ADDONS"
USE_EXPAND_HIDDEN="ABI_MIPS ABI_PPC ABI_S390 ABI_X86 CPU_FLAGS_ARM CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND"
USE_EXPAND_IMPLICIT="ARCH ELIBC KERNEL USERLAND"
USE_EXPAND_UNPREFIXED="ARCH"
USE_EXPAND_VALUES_ARCH="alpha amd64 amd64-fbsd amd64-linux arm arm-linux arm64 hppa ia64 m68k m68k-mint mips nios2 ppc ppc64 ppc64-linux ppc-aix ppc-macos riscv s390 sh sparc sparc64-solaris sparc-fbsd sparc-solaris x64-cygwin x64-macos x64-solaris x86 x86-cygwin x86-fbsd x86-linux x86-macos x86-solaris x86-winnt"
USE_EXPAND_VALUES_ELIBC="AIX bionic Cygwin Darwin DragonFly FreeBSD glibc HPUX Interix mingw mintlib musl NetBSD OpenBSD SunOS uclibc Winnt"
USE_EXPAND_VALUES_KERNEL="AIX Darwin FreeBSD freemint HPUX linux NetBSD OpenBSD SunOS Winnt"
USE_EXPAND_VALUES_USERLAND="BSD GNU"
USE_ORDER="env:pkg:conf:defaults:pkginternal:repo:env.d"
VBOX_APP_HOME="/usr/lib64/virtualbox"
VIDEO_CARDS="intel"
VTE_VERSION="4602"
WINDOWID="29360131"
XAUTHORITY="/root/.xauthiJ9ibh"
XDG_CONFIG_DIRS="/etc/xdg:/etc/xdg"
XDG_CURRENT_DESKTOP="XFCE"
XDG_DATA_DIRS="/usr/local/share:/usr/share:/usr/share"
XDG_MENU_PREFIX="xfce-"
XDG_SESSION_COOKIE="kimura-1498534676.763657-1277397738"
XSESSION="Xfce"
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
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The full build log is here.
Filled a bug the other day, but advised to seek assistance here. =sci-mathematics/rstudio-1.0.136 builds and runs ok. I'm stumped and can't work out whats causing the error, any suggestions or ideas welcome.
Wrapped 'LS_COLORS' to make the forum layout behave. —Chiitoo
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fedeliallalinea
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| Posted: Tue Jun 27, 2017 6:28 am Post subject: |
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@slackline
Your problem is different from Skirmitch.
What version of dev-lang/R you have?
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slackline
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| Posted: Tue Jun 27, 2017 6:33 am Post subject: |
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Suspected it might be different, but since still rstudio opted for this thread rather than a fresh one.
I've bumped dev-lang/R locally to the most recent release of 3.4.0. Runs fine (99% of the time running via Emacs using Emacs Speaks Statistics which I have also bumped locally to the latest 16.10).
| Code: |
$ eix -I dev-lang/R
[I] dev-lang/R
Available versions: 3.2.2^t (~)3.3.1^t (~)3.3.2^t (~)3.3.3^t[1] (~)3.4.0^t[1] {X cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk}
Installed versions: 3.4.0[?](05:46:59 11/05/17)(X cairo doc icu java jpeg lapack nls openmp perl png readline tiff tk -minimal -prefix -profile -static-libs)
Homepage: http://www.r-project.org/
Description: Language and environment for statistical computing and graphics
[1] "Personal overlay" /usr/portage/local
$ eix -I emacs/ess
[I] app-emacs/ess
Available versions: 14.09 15.03.1 15.09.2 (~)16.04 (~)16.10[1]
Installed versions: 16.10[?](00:41:33 29/12/16)
Homepage: http://ess.r-project.org/
Description: Emacs Speaks Statistics
[1] "Personal overlay" /usr/portage/local
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fedeliallalinea
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| Posted: Tue Jun 27, 2017 6:36 am Post subject: |
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You need R <3.4 for this version of rstudio, or upgrade rstudio to 1.1.x (not in portage)
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ct85711
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Joined: 27 Sep 2005
Posts: 1791
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| Posted: Tue Jun 27, 2017 6:43 am Post subject: |
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Here's the actual error message...
| Quote: | | /var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143/src/cpp/r/RRoutines.cpp:62:21: error: ‘struct R_CMethodDef’ has no member named ‘styles’; did you mean ‘types’? |
https://github.com/NixOS/nixpkgs/issues/25315
Doing a quick google search, and found a github bug report about this error message, and it seems 1.0.143 is incompatible with the version of R installed... According to the bug report, it has already been resolved in version 1.1.126.
So you may want to see about updating to that vresion or newer and see if it fixes the issue. Sadly, it doesn't say what version of R made the change, nor am I familiar with R to say what could be tried on doing a older version. |
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slackline
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| Posted: Tue Jun 27, 2017 6:47 am Post subject: |
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| fedeliallalinea wrote: | | You need R <3.4 for this version of rstudio, or upgrade rstudio to 1.1.x (not in portage) |
Thanks for taking the time to look at this fedeliallalinea.
The release notes for RStudio-1.0.143 indicate R-3.4 is supported and the build itself is only dependant on >=dev-lang/R-2.11.1. There is no rstudio-1.1.x release that I can find on the download page (although there is always the Github version, but I lack the experience to adapt the ebuild to -9999 to use this).
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slackline
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| Posted: Tue Jun 27, 2017 6:53 am Post subject: |
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| ct85711 wrote: | Here's the actual error message...
| Quote: | | /var/tmp/portage/sci-mathematics/rstudio-1.0.143/work/rstudio-1.0.143/src/cpp/r/RRoutines.cpp:62:21: error: ‘struct R_CMethodDef’ has no member named ‘styles’; did you mean ‘types’? |
https://github.com/NixOS/nixpkgs/issues/25315
Doing a quick google search, and found a github bug report about this error message, and it seems 1.0.143 is incompatible with the version of R installed... According to the bug report, it has already been resolved in version 1.1.126.
So you may want to see about updating to that vresion or newer and see if it fixes the issue. Sadly, it doesn't say what version of R made the change, nor am I familiar with R to say what could be tried on doing a older version. |
Thanks for digging that bug up, hadn't come across it. Conflicts with the release notes (as above) which is strange, especially as =sci-mathematics/rstudio-1.0.136 built ok.
Looks like I'll have to wait until 1.1.126 is released and try bumping locally.
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rsa4046
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Joined: 07 Feb 2005
Posts: 660
Location: The Big H, a bit SSW
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| Posted: Thu Aug 03, 2017 4:41 pm Post subject: |
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| slackline wrote: | | fedeliallalinea wrote: | | You need R <3.4 for this version of rstudio, or upgrade rstudio to 1.1.x (not in portage) |
Thanks for taking the time to look at this fedeliallalinea.
The release notes for RStudio-1.0.143 indicate R-3.4 is supported and the build itself is only dependant on >=dev-lang/R-2.11.1. There is no rstudio-1.1.x release that I can find on the download page (although there is always the Github version, but I lack the experience to adapt the ebuild to -9999 to use this). |
Hi all, thought I would again add my experiences to this. There is an ebuild and patch for rstudio-1.1.318 available at bugs.gentoo.org (specific link here) that installed fine on my setup: | Code: | # eix dev-lang/R
[I] dev-lang/R
Available versions: 3.2.2^t (~)3.3.2^t (~)3.4.1^t {X cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk}
Installed versions: 3.4.1(08:11:31 PM 07/08/2017)(X doc icu java jpeg nls openmp png readline tiff -cairo -lapack -minimal -perl -prefix -profile -static-libs -tk)
Homepage: http://www.r-project.org/
Description: Language and environment for statistical computing and graphics
# eix sci-mathematics/rstudio
[I] sci-mathematics/rstudio
Available versions: (~)0.97.336 (~)0.97.336[1] (~)0.97.551 (~)0.97.551[1] (~)0.98.490 (~)0.98.490[1] 0.98.490-r1 0.98.490-r1[1] (~)0.98.932 (~)0.98.932[1] (~)0.98.953 (~)0.98.953[1] (~)0.98.1028 (~)0.98.1028[1] (~)0.98.1091 (~)0.98.1091[1] (~)0.99.473-r1 (~)0.99.473-r1[1] (~)0.99.482 (~)0.99.482[1] (~)0.99.483 (~)0.99.483[1] (~)0.99.484 (~)0.99.484[1] (~)0.99.486-r1 (~)0.99.486-r1[1] (~)0.99.491 (~)0.99.491[1] (~)0.99.879 (~)0.99.879[1] (~)0.99.893 (~)0.99.893[1] (~)0.99.896 (~)0.99.896[1] (~)0.99.902 (~)0.99.902[1] (~)0.99.903 (~)0.99.903[1] (~)1.0.44 (~)1.0.44[1] (~)1.0.136 (~)1.0.136[1] (~)1.0.143 (~)1.0.143[1] [m](~)1.0.153 [m](~)1.0.153[1] (~)1.1.318[1] {dedicated server ELIBC="FreeBSD"}
Installed versions: 1.1.318[1](06:06:22 PM 08/03/2017)(-dedicated -server ELIBC="-FreeBSD")
Homepage: http://www.rstudio.org https://github.com/rstudio/rstudio/
Description: IDE for the R language
[1] "local" /usr/local/portage
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For those without experience in how to do this, if you lack a local portage tree, set this up first: | Code: | # mkdir -p /usr/local/portage/sci-mathematics/rstudio
# cd /usr/local/portage/sci-mathematics/rstudio
# wget https://bugs.gentoo.org/attachment.cgi?id=487784 -O rstudio-1.1.318.ebuild
# mkdir files
# wget https://bugs.gentoo.org/attachment.cgi?id=487786 -O files/rstudio-1.1.318-clang-pandoc.patch
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You'll need the other patches as well, so | Code: | # cp -ari /usr/portage/sci-mathematics/rstudio/files/* files
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Then update the Manifest: | Code: | # ebuild rstudio-1.1.318.ebuild digest
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Then emerge rstudio, checking that portage finds your local ebuild ...
| Code: | # emerge -vD sci-mathematics/rstudio -a
These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild U ] sci-mathematics/rstudio-1.1.318::local [1.0.143::gentoo] USE="-dedicated -server" 0 KiB
Total: 1 package (1 upgrade), Size of downloads: 0 KiB
Would you like to merge these packages? [Yes/No] y
>>> Verifying ebuild manifests
>>> Emerging (1 of 1) sci-mathematics/rstudio-1.1.318::local
* rstudio-1.1.318.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* gin-1.5.zip SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* gwt-2.7.0.zip SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* selenium-java-2.37.0.zip SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* selenium-server-standalone-2.37.0.jar SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* chromedriver-linux SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* core-dictionaries.zip SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* packrat-0.98.1000.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* rmarkdown-0.98.1000.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* shinyapps-0.98.1000.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ]
* Using: oracle-jdk-bin-1.8
>>> Unpacking source...
>>> Unpacking rstudio-1.1.318.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work
>>> Unpacking gwt-2.7.0.zip to /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work
>>> Unpacking packrat-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/dependencies/common
>>> Unpacking rmarkdown-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/dependencies/common
>>> Unpacking shinyapps-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/dependencies/common
>>> Unpacking rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/dependencies/common
>>> Source unpacked in /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work
>>> Preparing source in /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318 ...
* Applying rstudio-0.99.879-prefs.patch ... [ ok ]
* Applying rstudio-1.0.44-paths.patch ... [ ok ]
* Applying rstudio-1.1.318-clang-pandoc.patch ... [ ok ]
* Applying rstudio-0.98.490-linker_flags.patch ... [ ok ]
* Applying rstudio-0.98.1091-boost-1.57.patch ... [ ok ]
* Applying rstudio-0.99.473-qtsingleapplication.patch ... [ ok ]
* Applying rstudio-1.0.44-systemd.patch ... [ ok ]
mkdir: created directory ‘/var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/src/cpp/server/lib’
mkdir: created directory ‘/var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/src/cpp/server/lib/systemd’
mkdir: created directory ‘/var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/src/cpp/server/lib/systemd/system’
‘/usr/local/portage/sci-mathematics/rstudio/files/rstudio-server.service.in’ -> ‘/var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318/src/cpp/server/lib/systemd/system/rstudio-server.service.in’
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-mathematics/rstudio-1.1.318/work/rstudio-1.1.318 ...
...
<big snip>
* Updating desktop mime database ...
* Updating shared mime info database ...
* Updating icons cache ... [ ok ]
>>> Regenerating /etc/ld.so.cache...
>>> Original instance of package unmerged safely.
* Updating desktop mime database ...
* Updating shared mime info database ...
* Updating icons cache ... [ ok ]
>>> sci-mathematics/rstudio-1.1.318 merged.
>>> Auto-cleaning packages...
>>> No outdated packages were found on your system.
* GNU info directory index is up-to-date.
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HTH 
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sl70
Guru
Joined: 18 Jun 2002
Posts: 449
Location: Saitama, JP
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| Posted: Mon Jan 15, 2018 10:58 pm Post subject: |
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This same problem has been bugging me for months. Here's what I did to fix it:
Set the ruby version to ruby22 (with Rubygems) with eselect
Re-emerged leveldb
Re-emerged qtwebkit:5
Re-emerged rstudio
(Don't know if leveldb was really necessary)
Hope this helps someone else with the same problem. |
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Portage & Programming
