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xdmf2 : cmake error : Could NOT find HDF5 (solved)
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guill73
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PostPosted: Wed Mar 15, 2017 5:56 am    Post subject: xdmf2 : cmake error : Could NOT find HDF5 (solved) Reply with quote

Bonjour,

en voulant installer xdmf2 (dépendance pour installer vtk), j'ai obtenu l'erreur suivante :
Code:
  Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS)


or hdf5 est installé.

Voici les informations dont je dispose.

emerge --info '=sci-libs/xdmf2-1.0_p141226-r1::gentoo' :
http://pastebin.com/WUgvWznj

emerge -pqv '=sci-libs/xdmf2-1.0_p141226-r1::gentoo' :
Code:
[ebuild  N    ] sci-libs/xdmf2-1.0_p141226-r1  USE="-doc -python {-test}" PYTHON_TARGETS="python2_7"


Code:

cat /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/temp/build.log

 * Package:    sci-libs/xdmf2-1.0_p141226-r1
 * Repository: gentoo
 * Maintainer: sci@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU
 * FEATURES:   preserve-libs sandbox splitdebug userpriv usersandbox
>>> Unpacking source...
>>> Unpacking xdmf2-1.0_p141226.tar.xz to /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work
>>> Preparing source in /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226 ...
 * Applying xdmf2-1.0_p141226-module.patch ...                                                                                                        [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226_build"
cmake --no-warn-unused-cli -C /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DXDMF_BUILD_DOCUMENTATION=OFF -DBUILD_TESTING=OFF -DXDMF_WRAP_PYTHON=OFF -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226
Not searching for unused variables given on the command line.
loading initial cache file /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 4.9.4
-- The CXX compiler identification is GNU 4.9.4
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /usr/bin/git (found version "2.10.2")
-- Boost version: 1.62.0
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:138 (message):
  Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS)
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE)
  /usr/share/cmake/Modules/FindHDF5.cmake:801 (find_package_handle_standard_args)
  core/CMakeLists.txt:51 (find_package)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226_build/CMakeFiles/CMakeOutput.log".
 * ERROR: sci-libs/xdmf2-1.0_p141226-r1::gentoo failed (configure phase):
 *   cmake failed
 *
 * Call stack:
 *     ebuild.sh, line  115:  Called src_configure
 *   environment, line 4060:  Called cmake-utils_src_configure
 *   environment, line  936:  Called _cmake_execute_optionally 'src_configure'
 *   environment, line  272:  Called enable_cmake-utils_src_configure
 *   environment, line 1298:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 *
 * If you need support, post the output of `emerge --info '=sci-libs/xdmf2-1.0_p141226-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/xdmf2-1.0_p141226-r1::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226_build'
 * S: '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r1/work/xdmf2-1.0_p141226'



Toute aide sera appréciée...
Cordialement
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Last edited by guill73 on Wed Mar 15, 2017 9:30 am; edited 1 time in total
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fedeliallalinea
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PostPosted: Wed Mar 15, 2017 7:33 am    Post subject: Reply with quote

La version sci-libs/xdmf2-1.0_p141226-r2 applique un patch pour ce problème.
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guill73
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PostPosted: Wed Mar 15, 2017 9:30 am    Post subject: Reply with quote

Ça marche !

merci beaucoup
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