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[SOLVED] Energing Glibc-2.21-r2 freezes system
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stretchdude
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PostPosted: Sat Mar 05, 2016 2:30 pm    Post subject: [SOLVED] Energing Glibc-2.21-r2 freezes system Reply with quote

Hello Forum,

if I emerge Glibc in version 2.21-r2 my PC keeps freezing after that. Installing Glibc works fine but if I run emerge again afterwards for any package it freezes instantly. Normal working could be good for some time but even than the machine freezes. Sometimes if the machine is frozen the ATX-power button doesn't even work and I have to pull the Plug to recover. Most times the ATX-button can be used and some times even the reset button is enough.
At this moment I have masked Glibc to version 2.21-r1 and everything runs fine.

make.conf
Code:

CFLAGS="-O2 -pipe -madx  -mavx256-split-unaligned-load -mavx256-split-unaligned-store -mprfchw  -mrdseed  -mrtm"
CXXFLAGS="${CFLAGS}"

CHOST="x86_64-pc-linux-gnu"

USE="bindist mmx sse sse2  acpi bash-completion  cdr dvd dvdr gtk ipv6 lm_sensors multilib smp dbus policykit consolekit udev udisks -systemd tiff tk truetype truetype-fonts type1-fonts "

MAKEOPTS="-j9"

/proc/cpuinfo


Hardware is Intel i7-5775C
Code:

processor       : 0
vendor_id       : GenuineIntel
cpu family      : 6
model           : 71
model name      : Intel(R) Core(TM) i7-5775C CPU @ 3.30GHz
stepping        : 1
microcode       : 0x10
cpu MHz         : 3300.000
cache size      : 6144 KB
physical id     : 0
siblings        : 8
core id         : 0
cpu cores       : 4
apicid          : 0
initial apicid  : 0
fpu             : yes
fpu_exception   : yes
cpuid level     : 20
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf eagerfpu pni pclmulqdq dtes64 monitor ds_cpl vmx est tm2 ssse3 fma cx16 xtpr pdcm pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch ida arat epb pln pts dtherm tpr_shadow vnmi flexpriority ept vpid fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt
bugs            :
bogomips        : 6596.55
clflush size    : 64
cache_alignment : 64
address sizes   : 39 bits physical, 48 bits virtual


Any ideas?
Thanks and regards
Ben


Last edited by stretchdude on Fri Mar 18, 2016 3:46 pm; edited 2 times in total
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eccerr0r
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PostPosted: Sat Mar 05, 2016 6:37 pm    Post subject: Reply with quote

Usually strange behavior like this is due to hardware: motherboard or power supply marginalities. Try another motherboard or power supply to see if things are any better.
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stretchdude
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PostPosted: Sun Mar 06, 2016 8:42 am    Post subject: Reply with quote

But the System works good without the Glibc-Update. Additionally I am playing games (with windows) a lot on the same hardware which runs fine too. If it really is a fault of the hardware it must be a feature which is not used in GLibc-2.21-r1 or windows 7 at all!? I can not believe that.
By the way: I upgraded the power supply a few days ago before posting in the forum. :-) It doesn't help. A change of the mainboard is not really a quick task, so I'm trying not to do that as first action.

Thanks,
Ben
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eccerr0r
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PostPosted: Sun Mar 06, 2016 4:05 pm    Post subject: Reply with quote

Yes this software thing happens all the time having hardware that's dependent on software. The only other thing if you really believe it's software is to run remote serial console and see if you get an oops or if network continues to work when the GUI hangs? Is it dead in the console too?

You may try working around it by mucking with CFLAGS for glibc, though that probably has other drawbacks.

The kernel is NOT supposed to hang due to userland software like a bad glibc and especially not affect the reset switch, that there is indicative of a bad (~ly designed) motherboard... And possibly a bad CPU.
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stretchdude
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PostPosted: Mon Mar 07, 2016 6:27 am    Post subject: Reply with quote

Okay, I understand. I'm gonna try this serial console debug. But I have to figure how to do this first. This can take a bit of time. I'm comming back with a log or something.
I remember seeing something (Oops? or other error message, I's been a few weeks) which includes "machine-check" one day when I was trying to emerge some software without X running
Also I tried to use Eclipse yesterday (without emerging, just unzipped it) and the PC freezes too after a few minutes) But I can play Minecraft for hours which also runs Java. Strange behaviour.

Thanks
Ben
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eccerr0r
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PostPosted: Mon Mar 07, 2016 3:28 pm    Post subject: Reply with quote

If you got a machine check, it could be a bad processor too.

This is clearly a hardware issue.
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saellaven
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PostPosted: Mon Mar 07, 2016 5:14 pm    Post subject: Reply with quote

it could also be bad RAM.

Faulty power supply, bulging capacitors, heat, etc. These things can often be exposed when a system is put under a lot of stress, like when compiling a rather large package, even if it's fine otherwise. It definitely seems like a hardware issue.
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stretchdude
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PostPosted: Tue Mar 15, 2016 7:58 pm    Post subject: Reply with quote

Hello back again :-),

* I ran Memcheck over night which shows no errors. Also I tried the single RAM modules each of its own, and booted and crashed.
* Harddisk and SSD was also changed and only the Gentoo installation was cloned (with working glibc - than made the update) to the changed device
* Power Supply is totally new and with more power than the last one.
* I can't surely remember if I cross checked the video card but as I have sold my old one now there is no easy way to do it (again).
* So only Software, CPU and mainboard are left as source of the errors. (CPU and mainboard are the most expensive hardware parts left to change so I need to be really desperate to do it :-()
Maybe I should try a BIOS update first...!?

This log is logged from the serial console during a crash from eclipse(!) which freezes the whole system.
Looks like some ACPI/power-management-anything to me. But only from going through the printed lines not from real knowledge.
Maybe later I'll try a Libc-after-update-crash log to. But it takes some effort to regenerate my system.
maybe anyone can give a real hint.

EDIT: looks like at least eclipse is running now (after a bios update). I am surprised and happy :-) I'll report again after an glibc update as soon as I can effort the time.

Thanks and regards
Ben


Code:

[  117.567234] ------------[ cut here ]------------
[  117.567235] Kernel panic - not syncing: Timeout: Not all CPUs entered broadcast exception handler
[  117.567241] WARNING: CPU: 7 PID: 0 at kernel/rcu/tree.c:709 rcu_eqs_exit_common.isra.47+0xd6/0xf0()
[  117.567244] WARNING: CPU: 5 PID: 0 at kernel/rcu/tree.c:709 rcu_eqs_exit_common.isra.47+0xd6/0xf0()
[  117.567246] WARNING: CPU: 6 PID: 0 at kernel/rcu/tree.c:709 rcu_eqs_exit_common.isra.47+0xd6/0xf0()
[  117.567249] WARNING: CPU: 1 PID: 0 at kernel/rcu/tree.c:709 rcu_eqs_exit_common.isra.47+0xd6/0xf0()
[  117.567251] Modules linked in:
[  117.567251] Modules linked in:
[  117.567251] Modules linked in:
[  117.567252] Modules linked in:
[  117.567252]  nvidia_modeset(PO)
[  117.567253]  nvidia_modeset(PO)
[  117.567253]  nvidia_modeset(PO)
[  117.567254]  nvidia_modeset(PO)
[  117.567254]  cfg80211
[  117.567255]  cfg80211
[  117.567255]  cfg80211
[  117.567255]  cfg80211
[  117.567256]  rfkill
[  117.567256]  rfkill
[  117.567257]  rfkill
[  117.567257]  rfkill
[  117.567257]  uas
[  117.567258]  uas
[  117.567258]  uas
[  117.567258]  uas
[  117.567259]  nvidia(PO)
[  117.567259]  nvidia(PO)
[  117.567260]  nvidia(PO)
[  117.567260]  nvidia(PO)
[  117.567260]  x86_pkg_temp_thermal
[  117.567261]  x86_pkg_temp_thermal
[  117.567261]  x86_pkg_temp_thermal
[  117.567262]  x86_pkg_temp_thermal
[  117.567262]
[  117.567262]
[  117.567262]
[  117.567263]
[  117.567264] CPU: 7 PID: 0 Comm: swapper/7 Tainted: P           O    4.0.9-gentoo #2
[  117.567265] Hardware name: ASUS All Series/MAXIMUS VII RANGER, BIOS 2902 08/27/2015
[  117.567266]  ffffffff819dc7cb ffff88081edc3ed8 ffffffff817b7014 0000000000008d8d
[  117.567267]  0000000000000000 ffff88081edc3f18 ffffffff8104cd65 ffff88081edcbf40
[  117.567268]  0000000000000001 0000000000000000 ffff88081edc8eb8 ffff88081edc8f58
[  117.567268] Call Trace:
[  117.567272]  <IRQ>  [<ffffffff817b7014>] dump_stack+0x45/0x57
[  117.567273]  [<ffffffff8104cd65>] warn_slowpath_common+0x85/0xc0
[  117.567274]  [<ffffffff8104ce45>] warn_slowpath_null+0x15/0x20
[  117.567276]  [<ffffffff8109b076>] rcu_eqs_exit_common.isra.47+0xd6/0xf0
[  117.567277]  [<ffffffff8109d2a2>] rcu_irq_enter+0x42/0x70
[  117.567278]  [<ffffffff81050df9>] irq_enter+0x9/0x60
[  117.567280]  [<ffffffff81033512>] smp_apic_timer_interrupt+0x32/0x50
[  117.567281]  [<ffffffff817beaea>] apic_timer_interrupt+0x6a/0x70
[  117.567283]  <EOI>  <#MC>  [<ffffffff817b5a30>] ? wait_for_panic+0xc/0x40
[  117.567285]  [<ffffffff81027416>] mce_timed_out+0x66/0x70
[  117.567286]  [<ffffffff810286e7>] do_machine_check+0x4e7/0xa80
[  117.567288]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567289]  [<ffffffff817bf796>] machine_check+0x26/0x50
[  117.567290]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567293]  <<EOE>>  [<ffffffff813be282>] acpi_idle_do_entry+0x10/0x2b
[  117.567294]  [<ffffffff813be562>] acpi_idle_enter+0x1a9/0x1c8
[  117.567296]  [<ffffffff815eb00d>] cpuidle_enter_state+0x4d/0x160
[  117.567297]  [<ffffffff815eb142>] cpuidle_enter+0x12/0x20
[  117.567299]  [<ffffffff81083b64>] cpu_startup_entry+0x334/0x3d0
[  117.567301]  [<ffffffff810ae783>] ? clockevents_register_device+0xe3/0x150
[  117.567302]  [<ffffffff81031625>] start_secondary+0x135/0x140
[  117.567303] ---[ end trace 258f2ec1ed856b28 ]---
[  117.567304] CPU: 1 PID: 0 Comm: swapper/1 Tainted: P           O    4.0.9-gentoo #2
[  117.567304] Hardware name: ASUS All Series/MAXIMUS VII RANGER, BIOS 2902 08/27/2015
[  117.567306]  ffffffff819dc7cb ffff88081ec43ed8 ffffffff817b7014 0000000000009090
[  117.567307]  0000000000000000 ffff88081ec43f18 ffffffff8104cd65 ffff88081ec43f68
[  117.567308]  0000000000000001 0000000000000000 ffff88081ec48eb8 ffff88081ec48f58
[  117.567308] Call Trace:
[  117.567311]  <IRQ>  [<ffffffff817b7014>] dump_stack+0x45/0x57
[  117.567312]  [<ffffffff8104cd65>] warn_slowpath_common+0x85/0xc0
[  117.567312] ------------[ cut here ]------------
[  117.567314] WARNING: CPU: 7 PID: 0 at kernel/rcu/tree.c:585 rcu_eqs_enter_common+0x118/0x130()
[  117.567315]  [<ffffffff8104ce45>] warn_slowpath_null+0x15/0x20
[  117.567315] Modules linked in:
[  117.567317]  nvidia_modeset(PO)
[  117.567317]  [<ffffffff8109b076>] rcu_eqs_exit_common.isra.47+0xd6/0xf0
[  117.567318]  cfg80211
[  117.567319]  rfkill
[  117.567319]  [<ffffffff8109d2a2>] rcu_irq_enter+0x42/0x70
[  117.567319]  uas
[  117.567321]  nvidia(PO)
[  117.567321]  [<ffffffff81050df9>] irq_enter+0x9/0x60
[  117.567321]  x86_pkg_temp_thermal
[  117.567322]
[  117.567323]  [<ffffffff81033512>] smp_apic_timer_interrupt+0x32/0x50
[  117.567325]  [<ffffffff817beaea>] apic_timer_interrupt+0x6a/0x70
[  117.567327]  <EOI>  <#MC>  [<ffffffff817b5a30>] ? wait_for_panic+0xc/0x40
[  117.567328]  [<ffffffff81027416>] mce_timed_out+0x66/0x70
[  117.567330]  [<ffffffff810286e7>] do_machine_check+0x4e7/0xa80
[  117.567331]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567333]  [<ffffffff817bf796>] machine_check+0x26/0x50
[  117.567334]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567336]  <<EOE>>  [<ffffffff813be282>] acpi_idle_do_entry+0x10/0x2b
[  117.567337]  [<ffffffff813be562>] acpi_idle_enter+0x1a9/0x1c8
[  117.567339]  [<ffffffff815eb00d>] cpuidle_enter_state+0x4d/0x160
[  117.567340]  [<ffffffff815eb142>] cpuidle_enter+0x12/0x20
[  117.567342]  [<ffffffff81083b64>] cpu_startup_entry+0x334/0x3d0
[  117.567343]  [<ffffffff810ae783>] ? clockevents_register_device+0xe3/0x150
[  117.567345]  [<ffffffff81031625>] start_secondary+0x135/0x140
[  117.567345] ---[ end trace 258f2ec1ed856b29 ]---
[  117.567346] CPU: 5 PID: 0 Comm: swapper/5 Tainted: P        W  O    4.0.9-gentoo #2
[  117.567347] Hardware name: ASUS All Series/MAXIMUS VII RANGER, BIOS 2902 08/27/2015
[  117.567348]  ffffffff819dc7cb ffff88081ed43ed8 ffffffff817b7014 0000000000008e8e
[  117.567349]  0000000000000000 ffff88081ed43f18 ffffffff8104cd65 ffff88081ed43ef8
[  117.567350]  0000000000000001 0000000000000000 ffff88081ed48eb8 ffff88081ed48f58
[  117.567350] Call Trace:
[  117.567352]  <IRQ>  [<ffffffff817b7014>] dump_stack+0x45/0x57
[  117.567353]  [<ffffffff8104cd65>] warn_slowpath_common+0x85/0xc0
[  117.567354]  [<ffffffff8104ce45>] warn_slowpath_null+0x15/0x20
[  117.567356]  [<ffffffff8109b076>] rcu_eqs_exit_common.isra.47+0xd6/0xf0
[  117.567357]  [<ffffffff8109d2a2>] rcu_irq_enter+0x42/0x70
[  117.567357] ------------[ cut here ]------------
[  117.567359] WARNING: CPU: 1 PID: 0 at kernel/rcu/tree.c:585 rcu_eqs_enter_common+0x118/0x130()
[  117.567360]  [<ffffffff81050df9>] irq_enter+0x9/0x60
[  117.567360] Modules linked in:
[  117.567362]  nvidia_modeset(PO)
[  117.567362]  [<ffffffff81033512>] smp_apic_timer_interrupt+0x32/0x50
[  117.567362]  cfg80211
[  117.567364]  rfkill
[  117.567364]  [<ffffffff817beaea>] apic_timer_interrupt+0x6a/0x70
[  117.567364]  uas
[  117.567365]  <EOI>
[  117.567365]  nvidia(PO)
[  117.567365]  <#MC>
[  117.567365]  x86_pkg_temp_thermal
[  117.567366]
[  117.567367]  [<ffffffff817b5a30>] ? wait_for_panic+0xc/0x40
[  117.567368]  [<ffffffff81027416>] mce_timed_out+0x66/0x70
[  117.567369]  [<ffffffff810286e7>] do_machine_check+0x4e7/0xa80
[  117.567371]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567372]  [<ffffffff817bf796>] machine_check+0x26/0x50
[  117.567373]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567375]  <<EOE>>  [<ffffffff813be282>] acpi_idle_do_entry+0x10/0x2b
[  117.567376]  [<ffffffff813be562>] acpi_idle_enter+0x1a9/0x1c8
[  117.567378]  [<ffffffff815eb00d>] cpuidle_enter_state+0x4d/0x160
[  117.567379]  [<ffffffff815eb142>] cpuidle_enter+0x12/0x20
[  117.567381]  [<ffffffff81083b64>] cpu_startup_entry+0x334/0x3d0
[  117.567382]  [<ffffffff810ae783>] ? clockevents_register_device+0xe3/0x150
[  117.567383]  [<ffffffff81031625>] start_secondary+0x135/0x140
[  117.567384] ---[ end trace 258f2ec1ed856b2a ]---
[  117.567385] CPU: 1 PID: 0 Comm: swapper/1 Tainted: P        W  O    4.0.9-gentoo #2
[  117.567385] Hardware name: ASUS All Series/MAXIMUS VII RANGER, BIOS 2902 08/27/2015
[  117.567386]  ffffffff819dc7cb ffff88081ec43eb8 ffffffff817b7014 0000000000004c4c
[  117.567387]  0000000000000000 ffff88081ec43ef8 ffffffff8104cd65 ffff88081ec4d380
[  117.567388]  ffff88081ec4d2e0 0000000000000092 0000000000000001 ffff88081ec48f58
[  117.567389] Call Trace:
[  117.567389] ------------[ cut here ]------------
[  117.567391]  <IRQ>
[  117.567391] WARNING: CPU: 5 PID: 0 at kernel/rcu/tree.c:585 rcu_eqs_enter_common+0x118/0x130()
[  117.567392] Modules linked in:
[  117.567392]  [<ffffffff817b7014>] dump_stack+0x45/0x57
[  117.567393]  nvidia_modeset(PO)
[  117.567394]  cfg80211
[  117.567394]  [<ffffffff8104cd65>] warn_slowpath_common+0x85/0xc0
[  117.567394]  rfkill
[  117.567395]  uas
[  117.567395]  [<ffffffff8104ce45>] warn_slowpath_null+0x15/0x20
[  117.567396]  nvidia(PO)
[  117.567397]  x86_pkg_temp_thermal
[  117.567397]  [<ffffffff8109a698>] rcu_eqs_enter_common+0x118/0x130
[  117.567397]
[  117.567399]  [<ffffffff8109d225>] rcu_irq_exit+0x55/0x90
[  117.567400]  [<ffffffff81050e8e>] irq_exit+0x3e/0x90
[  117.567401]  [<ffffffff81033521>] smp_apic_timer_interrupt+0x41/0x50
[  117.567402]  [<ffffffff817beaea>] apic_timer_interrupt+0x6a/0x70
[  117.567404]  <EOI>  <#MC>  [<ffffffff817b5a30>] ? wait_for_panic+0xc/0x40
[  117.567406]  [<ffffffff81027416>] mce_timed_out+0x66/0x70
[  117.567407]  [<ffffffff810286e7>] do_machine_check+0x4e7/0xa80
[  117.567408]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567409]  [<ffffffff817bf796>] machine_check+0x26/0x50
[  117.567411]  [<ffffffff8102fc97>] ? acpi_processor_ffh_cstate_enter+0x87/0xc0
[  117.567412]  <<EOE>>  [<ffffffff813be282>] acpi_idle_do_entry+0x10/0x2b
[  117.567413]  [<ffffffff813be562>] acpi_idle_enter+0x1a9/0x1c8
[  117.567415]  [<ffffffff815eb00d>] cpuidle_enter_state+0x4d/0x160
[  117.567416]  [<ffffffff815eb142>] cpuidle_enter+0x12/0x20
[  117.567418]  [<ffffffff81083b64>] cpu_startup_entry+0x334/0x3d0
[  117.567419]  [<ffffffff810ae783>] ? clockevents_register_device+0xe3/0x150
[  117.567420]  [<ffffffff81031625>] start_secondary+0x135/0x140
[  117.567421] ---[ end trace 258f2ec1ed856b2b ]---
[  117.567421] CPU: 5 PID: 0 Comm: swapper/5 Tainted: P        W  O    4.0.9-gentoo #2
[  117.567422] Hardware name: ASUS All Series/MAXIMUS VII RANGER, BIOS 2902 08/27/2015
[  117.567423]  ffffffff819dc7cb ffff88081ed43eb8 ffffffff817b7014 0000000000008c8c
[  117.567423]  0000000000000000 ffff88081ed43ef8 ffffffff8104cd65 ffff88081ed4d380
[  117.567424]  ffff88081ed4d2e0 0000000000000092 0000000000000001 ffff88081ed48f58
[  117.567424] Call Trace:
[  117.567425]  <IRQ>  [<ffffffff817b7014>] dump_stack+0x45/0x57
[  117.567426]  [<ffffffff8104cd65>] warn_slowpath_common+0x85/0xc0
[  117.567427]  [<ffffffff8104ce45>] warn_slowpath_null+0x15/0x20
[  117.567428]  [<ffffffff8109a698>] rcu_eqs_enter_common+0x118/0x130
[  117.567429]  [<fffffñ
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eccerr0r
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PostPosted: Tue Mar 15, 2016 10:07 pm    Post subject: Reply with quote

Yes the firmware update could help by programming the CPU more conservatively or correctly especially if your CPU model is later than the firmware.
Hope that's it and it's completely solved now.
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stretchdude
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PostPosted: Fri Mar 18, 2016 3:46 pm    Post subject: Reply with quote

Hello,

looks like that's it. I updated GLibc and had no crashes since then. The Firmware seams to have been bad.
Thanks for your help.

Regards
Ben
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