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ajgringo619
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PostPosted: Fri Jan 27, 2023 1:53 am    Post subject: [SOLVED] Not all packages are being upgraded Reply with quote

Lately I've been noticing that when I try to clean the distribution source files with eclean, I'm getting notified of packages that are no longer available:
Code:
sudo eclean-dist --deep
 * Building file list for distfiles cleaning...
 * Your distfiles directory was already clean.

   The following unavailable installed packages were found
             dev-perl/Devel-CheckLib-1.140.0
             dev-python/mako-1.2.3
             dev-qt/linguist-tools-5.15.7
             dev-util/b2-4.9.2

eix flags all of the aforementioned packages as upgradeable. Since I run this right after an upgrade, I'm not sure what I'm doing wrong. My upgrade command is:
Code:
sudo emerge -aubkDU --buildpkg-exclude "virtual/* sys-kernel/* dev-lang/rust-bin" @world

Which I had expected to upgrade everything, but that's obviously not the case. I just started using eclean, so I had no idea when this actually began.


Last edited by ajgringo619 on Fri Jan 27, 2023 2:37 am; edited 1 time in total
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sam_
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PostPosted: Fri Jan 27, 2023 2:02 am    Post subject: Reply with quote

Please share the output of:
1. emerge -p -uvDU @world
2. emerge -pev --backtrack=0 @world
3. emerge --info

Note that all of the packages in your list are common BDEPENDs (and BDEPEND-only, usually). Is this machine a binpkg consumer?
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ajgringo619
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PostPosted: Fri Jan 27, 2023 2:19 am    Post subject: Reply with quote

sam_ wrote:
Please share the output of:
1. emerge -p -uvDU @world
2. emerge -pev --backtrack=0 @world
3. emerge --info

Note that all of the packages in your list are common BDEPENDs (and BDEPEND-only, usually). Is this machine a binpkg consumer?

Code:
emerge -p -uvDU @world

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U  ] dev-util/b2-4.9.3::gentoo [4.9.2::gentoo] USE="-examples" 954 KiB
[ebuild     U  ] dev-perl/Devel-CheckLib-1.160.0::gentoo [1.140.0::gentoo] USE="-test" 16 KiB
[ebuild     U  ] sys-libs/binutils-libs-2.39-r4:0/2.39::gentoo [2.38-r2:0/2.38::gentoo] USE="nls -64-bit-bfd (-cet) -multitarget -static-libs" ABI_X86="(64) -32 (-x32)" 24659 KiB
[ebuild     U  ] dev-qt/linguist-tools-5.15.8:5::gentoo [5.15.7:5::gentoo] USE="-debug -qml -test" 8691 KiB
[ebuild     U  ] dev-python/mako-1.2.4::gentoo [1.2.3::gentoo] USE="-doc -test" PYTHON_TARGETS="python3_10 (-pypy3) -python3_9 -python3_11 (-python3_8%)" 486 KiB

Total: 5 packages (5 upgrades), Size of downloads: 34804 KiB

Code:
emerge -pev --backtrack=0 @world
Total: 1010 packages (5 upgrades, 1005 reinstalls), Size of downloads: 4022717 KiB

Code:
emerge --info
Portage 3.0.43 (python 3.10.9-final-0, default/linux/amd64/17.1/desktop/gnome/systemd/merged-usr, gcc-11, glibc-2.36-r5, 6.1.8-gentoo-dist x86_64)
=================================================================
System uname: Linux-6.1.8-gentoo-dist-x86_64-AMD_Ryzen_7_2700X_Eight-Core_Processor-with-glibc2.36
KiB Mem:     8120588 total,   7310492 free
KiB Swap:    8387580 total,   8387580 free
Timestamp of repository gentoo: Wed, 25 Jan 2023 17:30:01 +0000
Head commit of repository gentoo: eb1ac78c6c95863fc7c5e589836fabbbda4907a0
Timestamp of repository guru: Thu, 26 Jan 2023 09:01:57 +0000
Head commit of repository guru: 479675419808782b37fac7c2376b7210aa87c701

sh bash 5.1_p16-r2
ld GNU ld (Gentoo 2.39 p5) 2.39.0
app-misc/pax-utils:        1.3.5::gentoo
app-shells/bash:           5.1_p16-r2::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.36.0-r1::gentoo
dev-lang/python:           3.10.9::gentoo, 3.11.1::gentoo
dev-lang/rust-bin:         1.66.1::gentoo
dev-util/cmake:            3.24.3::gentoo
dev-util/meson:            0.64.1::gentoo
sys-apps/baselayout:       2.9::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-apps/systemd:          252.4::gentoo
sys-devel/autoconf:        2.13-r7::gentoo, 2.71-r5::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.39-r4::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/gcc:             11.3.1_p20221209::gentoo, 12.2.1_p20230121-r1::gentoo
sys-devel/gcc-config:      2.8::gentoo
sys-devel/libtool:         2.4.7::gentoo
sys-devel/llvm:            14.0.6-r2::gentoo, 15.0.6-r1::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.15-r3::gentoo (virtual/os-headers)
sys-libs/glibc:            2.36-r5::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://gentoo-systemd/gentoo-portage
    priority: -1000
    volatile: True
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts:
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24

guru
    location: /var/db/repos/guru
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/guru.git
    masters: gentoo
    volatile: True

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--jobs 2 --load-average 6.8"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://gentoo-mirror.flux.utah.edu/ https://mirror.leaseweb.com/gentoo/"
LANG="en_US.utf8"
LC_ALL="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
MAKEFLAGS="-j6"
MAKEOPTS="-j3"
PKGDIR="/media/host/gentoo-binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/home/ajgringo619/.nix-profile/bin/fish"
USE="X a52 aac acl acpi alsa amd64 branding bzip2 cairo cdda cdr cli colord crypt cups dbus dri dts dvd dvdr eds encode evo exif flac fortran gdbm gif gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gui iconv icu introspection ipv6 jpeg lcms libglvnd libnotify libsecret libtirpc mad mng mp3 mp4 mpeg multilib nautilus ncurses networkmanager nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds pulseaudio qt5 readline sdl seccomp sound spell ssl startup-notification svg sysprof systemd test-rust tiff tracker truetype udev udisks unicode upower usb vorbis wayland wxwidgets x264 xattr xcb xft xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 pclmul popcnt rdrand sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" RUBY_TARGETS="ruby27 ruby30" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

Yes, this system is a binpkg consumer.
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sam_
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PostPosted: Fri Jan 27, 2023 2:25 am    Post subject: Reply with quote

Ah, you'll need to do --with-bdeps=y then on world upgrades if you want to to include those. Otherwise the eclean message is harmless.
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ajgringo619
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PostPosted: Fri Jan 27, 2023 2:27 am    Post subject: Reply with quote

sam_ wrote:
Ah, you'll need to do --with-bdeps=y then on world upgrades if you want to to include those. Otherwise the eclean message is harmless.

Gotcha - thanks for the quick reply. You mentioned that these are common build depends, so leaving them won't hurt anything as they'll be upgraded as needed, correct?
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sam_
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Joined: 14 Aug 2020
Posts: 1678

PostPosted: Fri Jan 27, 2023 2:36 am    Post subject: Reply with quote

ajgringo619 wrote:
sam_ wrote:
Ah, you'll need to do --with-bdeps=y then on world upgrades if you want to to include those. Otherwise the eclean message is harmless.

Gotcha - thanks for the quick reply. You mentioned that these are common build depends, so leaving them won't hurt anything as they'll be upgraded as needed, correct?


Yeah, exactly. If something starts to actually need them (either at runtime or because you're building something from source), it should include them.
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