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muelbuesch
n00b
Joined: 17 May 2011
Posts: 14
Location: Essen, Germany
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 Posted: Fri Dec 07, 2018 12:45 pm Post subject: emerge --config mariadb fails |
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I'm trying to emerge mariadb following the https://wiki.gentoo.org/wiki/MariaDB-entry. However, "emerge --config fails".
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emerge --config =dev-db/mariadb-10.1.37
Configuring pkg...
* Trying to get password for mysql 'root' user from 'mysql' section ...
* Trying to get password for mysql 'root' user from 'client' section ...
* Please provide a password for the mysql 'root' user now
* or through the /root/.my.cnf file.
* Avoid ["'\_%] characters in the password
>
* Retype the password
>
* Creating the mysql database and setting proper permissions on it ...
* Command: /usr/share/mariadb/scripts/mysql_install_db --basedir=/usr --loose-skip-grant-tables --loose-skip-host-cache --loose-skip-name-resolve --loose-skip-networking --loose-skip-slave-start --loose-skip-ssl --loose-skip-log-bin --loose-skip-relay-log --loose-skip-slow-query-log --loose-skip-external-locking --loose-skip-log-slave-updates --datadir=///var/lib/mysql --tmpdir=//
* ERROR: dev-db/mariadb-10.1.37::gentoo failed (config phase):
* Failed to initialize mysqld. Please review /var/log/mysql/mysqld.err AND /var/tmp/portage/dev-db/mariadb-10.1.37/temp/mysql_install_db.log
*
* Call stack:
* ebuild.sh, line 124: Called pkg_config
* environment, line 5362: Called die
* The specific snippet of code:
* die "Failed to initialize mysqld. Please review ${EPREFIX}/var/log/mysql/mysqld.err AND ${TMPDIR}/mysql_install_db.log";
*
* If you need support, post the output of `emerge --info '=dev-db/mariadb-10.1.37::gentoo'`,
* the complete build log and the output of `emerge -pqv '=dev-db/mariadb-10.1.37::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM= CLASSPATH="" JAVA_HOME=""
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =mariadb-10.1.37
* The complete build log is located at '/var/tmp/portage/dev-db/mariadb-10.1.37/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/dev-db/mariadb-10.1.37/temp/environment'.
* Working directory: '/var/tmp/portage/dev-db/mariadb-10.1.37/temp'
* S: '/var/tmp/portage/dev-db/mariadb-10.1.37/work/mariadb-10.1.37'
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Note the strange paths when calling "mysql_install_db": --tmpdir is set to "//" and true enough it cannot create temporary tables:
/var/log/mysql/mysqld.err shows:
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2018-12-07 13:28:49 139838966638400 [ERROR] mysqld: Can't create/write to file '/ibuyZKcQ' (Errcode: 13 "Permission denied")
2018-12-07 13:28:49 7f2ecbeea740 InnoDB: Error: unable to create temporary file; errno: 13
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However in /etc/mysql/my.cnf tmpdir is set correctly to:
What went wrong and how can I fix it? |
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muelbuesch
n00b
Joined: 17 May 2011
Posts: 14
Location: Essen, Germany
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| Posted: Fri Dec 07, 2018 12:49 pm Post subject: |
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# cat /var/tmp/portage/dev-db/mariadb-10.1.37/temp/mysql_install_db.log
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Installing MariaDB/MySQL system tables in '///var/lib/mysql' ...
2018-12-07 13:45:23 139924042692416 [Note] /usr/sbin/mysqld (mysqld 10.1.37-MariaDB) starting as process 17618 ...
Installation of system tables failed! Examine the logs in
///var/lib/mysql for more information.
The problem could be conflicting information in an external
my.cnf files. You can ignore these by doing:
shell> /usr/share/mariadb/scripts/mysql_install_db --defaults-file=~/.my.cnf
You can also try to start the mysqld daemon with:
shell> /usr/sbin/mysqld --skip-grant-tables --general-log &
and use the command line tool /usr/bin/mysql
to connect to the mysql database and look at the grant tables:
shell> /usr/bin/mysql -u root mysql
mysql> show tables;
Try 'mysqld --help' if you have problems with paths. Using
--general-log gives you a log in ///var/lib/mysql that may be helpful.
The latest information about mysql_install_db is available at
https://mariadb.com/kb/en/installing-system-tables-mysql_install_db
You can find the latest source at https://downloads.mariadb.org and
the maria-discuss email list at https://launchpad.net/~maria-discuss
Please check all of the above before submitting a bug report
at http://mariadb.org/jira
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cat /var/log/mysql/mysqld.err
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2018-12-07 13:45:23 139924042692416 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.
2018-12-07 13:45:23 139924042692416 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2018-12-07 13:45:23 139924042692416 [Note] InnoDB: The InnoDB memory heap is disabled
2018-12-07 13:45:23 139924042692416 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-12-07 13:45:23 139924042692416 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2018-12-07 13:45:23 139924042692416 [Note] InnoDB: Compressed tables use zlib 1.2.11
2018-12-07 13:45:23 139924042692416 [Note] InnoDB: Using Linux native AIO
2018-12-07 13:45:23 139924042692416 [Note] InnoDB: Using SSE crc32 instructions
2018-12-07 13:45:23 139924042692416 [ERROR] mysqld: Can't create/write to file '/ibNLJAG5' (Errcode: 13 "Permission denied")
2018-12-07 13:45:23 7f429adc3740 InnoDB: Error: unable to create temporary file; errno: 13
2018-12-07 13:45:23 139924042692416 [ERROR] Plugin 'InnoDB' init function returned error.
2018-12-07 13:45:23 139924042692416 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
2018-12-07 13:45:23 139924042692416 [ERROR] Unknown/unsupported storage engine: InnoDB
2018-12-07 13:45:23 139924042692416 [ERROR] Aborting
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# emerge --info '=dev-db/mariadb-10.1.37::gentoo'
| Code: |
Portage 2.3.51 (python 3.6.5-final-0, default/linux/amd64/17.0, gcc-6.4.0, glibc-2.27-r6, 3.10.40-vs2.3.6.8 x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-3.10.40-vs2.3.6.8-x86_64-Intel-R-_Xeon-R-_CPU_X5650_@_2.67GHz-with-gentoo-2.6
KiB Mem: 41200620 total, 17757592 free
KiB Swap: 1951892 total, 1807348 free
Timestamp of repository gentoo: Fri, 07 Dec 2018 10:00:01 +0000
Head commit of repository gentoo: e3dc6f2d5e6ee691c703d06487b39f829f1ef38e
sh bash 4.4_p12
ld GNU ld (Gentoo 2.30 p2) 2.30.0
app-shells/bash: 4.4_p12::gentoo
dev-lang/perl: 5.24.3-r1::gentoo
dev-lang/python: 2.7.15::gentoo, 3.6.5::gentoo
dev-util/pkgconfig: 0.29.2::gentoo
sys-apps/baselayout: 2.6-r1::gentoo
sys-apps/openrc: 0.38.3::gentoo
sys-apps/sandbox: 2.13::gentoo
sys-devel/autoconf: 2.69-r4::gentoo
sys-devel/automake: 1.15.1-r2::gentoo
sys-devel/binutils: 2.30-r2::gentoo
sys-devel/gcc: 6.4.0-r1::gentoo
sys-devel/gcc-config: 1.8-r1::gentoo
sys-devel/libtool: 2.4.6-r3::gentoo
sys-devel/make: 4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc: 2.27-r6::gentoo
Repositories:
gentoo
location: /usr/portage
sync-type: rsync
sync-uri: rsync://hmirror.as-infodienste.de/gentoo-portage
priority: -1000
sync-rsync-verify-metamanifest: no
sync-rsync-extra-opts:
sync-rsync-verify-jobs: 1
sync-rsync-verify-max-age: 24
Installed sets: @baseset, @toolset
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=corei7 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.2/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=corei7 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-march=corei7 -O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles getbinpkg merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-march=corei7 -O2 -pipe"
GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/ http://ftp.halifax.rwth-aachen.de/gentoo/ http://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j25"
PKGDIR="/usr/portage/packages"
PORTAGE_BINHOST="http://mirror.as-infodienste.de:8080/binpkg"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acpi agent amd64 apm bash-completion berkdb bzip2 caps cracklib crypt cxx gdbm ncurses nls nptl pam pcre perl php posix python readline session slang sockets ssl threads udev unicode xml zlib" ABI_X86="64" APACHE2_MODULES="alias auth_basic authn_core authn_file authz_core authz_host authz_user dir headers info log_config mime socache_shmcb status unixd" APACHE2_MPMS="prefork" CPU_FLAGS_X86="aes mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="openssl" ELIBC="glibc" KERNEL="linux" PHP_TARGETS="php7-2" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" USERLAND="GNU"
Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
=================================================================
Package Settings
=================================================================
dev-db/mariadb-10.1.37::gentoo was built with the following:
USE="cracklib pam perl server xml -backup -bindist (-client-libs) -debug -extraengine -galera -innodb-lz4 -innodb-lzo -innodb-snappy -jdbc -jemalloc -kerberos -latin1 -libressl (-mroonga) -numa -odbc -oqgraph -profiling (-selinux) -sphinx -sst-mariabackup -sst-rsync -sst-xtrabackup -static -static-libs -systemd -systemtap -tcmalloc -test -tokudb -yassl" ABI_X86="(64) -32 (-x32)"
CFLAGS="-march=corei7 -O2 -pipe -fno-strict-aliasing"
CXXFLAGS="-march=corei7 -O2 -pipe -felide-constructors -fno-strict-aliasing"
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# emerge -pqv '=dev-db/mariadb-10.1.37::gentoo'
| Code: |
[binary R ] dev-db/mariadb-10.1.37 USE="cracklib pam perl server xml -backup -bindist (-client-libs) -debug -extraengine -galera -innodb-lz4 -innodb-lzo -innodb-snappy -jdbc -jemalloc -kerberos -latin1 -libressl (-mroonga) -numa -odbc -oqgraph -profiling (-selinux) -sphinx -sst-mariabackup -sst-rsync -sst-xtrabackup -static -static-libs -systemd -systemtap -tcmalloc -test -tokudb -yassl" ABI_X86="(64) -32 (-x32)"
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