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slackline
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Joined: 01 Apr 2005
Posts: 1471
Location: /uk/sheffield
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 Posted: Fri Oct 19, 2018 8:48 am Post subject: [SOLVED] re-emerging vigra fails |
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I've encountered a problem emerging vigra which is required by portage for a @preserved-rebuild.
Searching I found this post from last year which suggested reducing the number of cores and/or disabling ccache solved the problem. I've tried both (individually and in combination) but to no avail.
With ccache disabled and 'MAKEOPTS=-j9' the build still fails with...
| Code: |
Copying target vigranumpy_histogram to temporary module directory
cd /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core && /usr/bin/cmake -E copy_if_different /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core/histogram.so /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/vigra/
make[2]: Leaving directory '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
[ 50%] Built target vigranumpy_histogram
[ 50%] Linking CXX shared library sampling.so
cd /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/vigranumpy_sampling.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-g++ -fPIC -std=c++11 -pthread -march=skylake -O2 -pipe -Wl,-O1 -Wl,--as-needed -shared -Wl,-soname,sampling.so -o sampling.so CMakeFiles/vigranumpy_sampling.dir/sampling.cxx.o -lpython2.7 -lboost_python-2.7-mt
Copying target vigranumpy_sampling to temporary module directory
cd /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core && /usr/bin/cmake -E copy_if_different /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core/sampling.so /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/vigra/
make[2]: Leaving directory '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
[ 50%] Built target vigranumpy_sampling
make[1]: Leaving directory '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
make: *** [Makefile:163: all] Error 2
* ERROR: media-libs/vigra-1.11.1::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=media-libs/vigra-1.11.1::gentoo'`,
* the complete build log and the output of `emerge -pqv '=media-libs/vigra-1.11.1::gentoo'`.
* The complete build log is located at '/var/tmp/portage/media-libs/vigra-1.11.1/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/media-libs/vigra-1.11.1/temp/environment'.
* Working directory: '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
* S: '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1'
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With ccache disabled and MAKEOPTS=-j4 the build fails with...
| Code: |
[ 42%] Built target vigraimpex
In file included from /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1/include/vigra/multi_array.hxx:49,
from /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1/include/vigra/numpy_array.hxx:47,
from /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1/vigranumpy/src/core/edgedetection.cxx:39:
/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1/include/vigra/multi_pointoperators.hxx:1026:1: error: ‘void vigra::transformMultiArray(const vigra::MultiArrayView<N1, T1, S1>&, vigra::MultiArrayView<N, T2, S2>, const Functor&) [with unsigned int N = 2; T1 = vigra::TinyVector<float, 3>; S1 = vigra::StridedArrayTag; T2 = vigra::TinyVector<float, 2>; S2 = vigra::StridedArrayTag; Functor = vigra::pythonCannyEdgeImageColor(vigra::NumpyArray<2, vigra::RGBValue<VALUETYPE> >, double, double, DestPixelType, vigra::NumpyArray<2, vigra::Singleband<T> >) [with SrcPixelType = float; DestPixelType = unsigned char]::<lambda(const vigra::TinyVector<float, 3>&)>]’, declared using local type ‘const vigra::pythonCannyEdgeImageColor(vigra::NumpyArray<2, vigra::RGBValue<VALUETYPE> >, double, double, DestPixelType, vigra::NumpyArray<2, vigra::Singleband<T> >) [with SrcPixelType = float; DestPixelType = unsigned char]::<lambda(const vigra::TinyVector<float, 3>&)>’, is used but never defined [-fpermissive]
transformMultiArray(MultiArrayView<N, T1, S1> const & source,
^~~~~~~~~~~~~~~~~~~
make[2]: *** [vigranumpy/src/core/CMakeFiles/vigranumpy_analysis.dir/build.make:76: vigranumpy/src/core/CMakeFiles/vigranumpy_analysis.dir/edgedetection.cxx.o] Error 1
make[2]: Leaving directory '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
make[1]: *** [CMakeFiles/Makefile2:4479: vigranumpy/src/core/CMakeFiles/vigranumpy_analysis.dir/all] Error 2
make[1]: Leaving directory '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
make: *** [Makefile:163: all] Error 2
* ERROR: media-libs/vigra-1.11.1::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=media-libs/vigra-1.11.1::gentoo'`,
* the complete build log and the output of `emerge -pqv '=media-libs/vigra-1.11.1::gentoo'`.
* The complete build log is located at '/var/tmp/portage/media-libs/vigra-1.11.1/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/media-libs/vigra-1.11.1/temp/environment'.
* Working directory: '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
* S: '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1'
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Enabling ccache and MAKEOPTS=-j9...
| Code: |
[ 50%] Linking CXX shared library histogram.so
cd /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/vigranumpy_histogram.dir/link.txt --verbose=1
/usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -fPIC -std=c++11 -pthread -march=skylake -O2 -pipe -Wl,-O1 -Wl,--as-needed -shared -Wl,-soname,histogram.so -o histogram.so CMakeFiles/vigranumpy_histogram.dir/histogram.cxx.o -lpython2.7 -lboost_python-2.7-mt
Copying target vigranumpy_histogram to temporary module directory
cd /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core && /usr/bin/cmake -E copy_if_different /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/src/core/histogram.so /var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7/vigranumpy/vigra/
make[2]: Leaving directory '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
[ 50%] Built target vigranumpy_histogram
make[1]: Leaving directory '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
make: *** [Makefile:163: all] Error 2
* ERROR: media-libs/vigra-1.11.1::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=media-libs/vigra-1.11.1::gentoo'`,
* the complete build log and the output of `emerge -pqv '=media-libs/vigra-1.11.1::gentoo'`.
* The complete build log is located at '/var/tmp/portage/media-libs/vigra-1.11.1/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/media-libs/vigra-1.11.1/temp/environment'.
* Working directory: '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1-python2_7'
* S: '/var/tmp/portage/media-libs/vigra-1.11.1/work/vigra-1.11.1'
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This is one step before emerge bails when ccache is disabled.
Any advice or thoughts on things to try would be very much appreciated as I'm stumped.
Cheers,
slackline
_________________
"Science is what we understand well enough to explain to a computer. Art is everything else we do." - Donald Knuth
Last edited by slackline on Mon Oct 22, 2018 4:27 pm; edited 1 time in total |
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fedeliallalinea
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Posts: 30913
Location: here
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| Posted: Fri Oct 19, 2018 8:55 am Post subject: |
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Try patch proposed in related bug https://bugs.gentoo.org/664720
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slackline
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Joined: 01 Apr 2005
Posts: 1471
Location: /uk/sheffield
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| Posted: Fri Oct 19, 2018 9:58 am Post subject: |
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Thanks, I had searched Bugzilla but it didn't throw that up.
Will try and work out how to apply that patch locally over the weekend.
Cheers,
slackline
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"Science is what we understand well enough to explain to a computer. Art is everything else we do." - Donald Knuth |
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fedeliallalinea
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Joined: 08 Mar 2003
Posts: 30913
Location: here
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| Posted: Fri Oct 19, 2018 9:59 am Post subject: |
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| slackline wrote: | | Will try and work out how to apply that patch locally over the weekend. |
You can use /etc/portage/patches for apply user patches
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slackline
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Joined: 01 Apr 2005
Posts: 1471
Location: /uk/sheffield
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| Posted: Mon Oct 22, 2018 3:22 pm Post subject: |
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Thats brilliant, hadn't come across that feature, thank you.
Patch applied and Vigra compiles fine.
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"Science is what we understand well enough to explain to a computer. Art is everything else we do." - Donald Knuth |
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jagdpanther
l33t
Joined: 22 Nov 2003
Posts: 729
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| Posted: Mon Apr 08, 2019 6:07 pm Post subject: |
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I just had this same error. (8 April 2019).
According to this bug report the "unstable" -r1 version works.
https://bugs.gentoo.org/682860
And yes on my Gentoo system media-libs/vigra-1.11.1-r1 will emerge where
media-libs/vigra-1.11.1 will not. |
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Mr Bonhomme
n00b
Joined: 03 Mar 2003
Posts: 30
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| Posted: Mon Apr 08, 2019 8:20 pm Post subject: |
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| jagdpanther wrote: | I just had this same error. (8 April 2019).
According to this bug report the "unstable" -r1 version works.
https://bugs.gentoo.org/682860
And yes on my Gentoo system media-libs/vigra-1.11.1-r1 will emerge where
media-libs/vigra-1.11.1 will not. |
Thanks, it solved the problem here too. |
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