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Osmium_Dresden
n00b
Joined: 13 Apr 2018
Posts: 8
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 Posted: Tue Apr 24, 2018 7:59 am Post subject: Armadillo with useflag superlu enabled won't emerge |
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Hi,
when trying to emerge armadillo with the superlu useflag enabled, I get the error message that /supermatrix.h cannot be found (no such file or directory). The following is the complete building log:
| Code: |
* armadillo-6.200.3.tar.gz BLAKE2B SHA512 size ;-) ... [ ok ]
>>> Unpacking source...
>>> Unpacking armadillo-6.200.3.tar.gz to /var/tmp/portage/sci-libs/armadillo-6.200.3/work
>>> Source unpacked in /var/tmp/portage/sci-libs/armadillo-6.200.3/work
>>> Preparing source in /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3"
cmake --no-warn-unused-cli -C /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DINSTALL_LIB_DIR=/usr/lib64 -DARMA_EXTRA_DEBUG=OFF -DARMA_USE_MKL_ALLOC=OFF -DARMA_USE_TBB_ALLOC=OFF -DARPACK_FOUND=ON -DARPACK_LIBRARY=-L/usr/lib64/blas/reference -L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -larpack -lblas -llapack -lblas -DBLAS_FOUND=ON -DBLAS_LIBRARIES=-L/usr/lib64/blas/reference -lblas -DLAPACK_FOUND=ON -DLAPACK_LIBRARIES=-L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas -DSuperLU_FOUND=ON -DSuperLU_LIBRARIES=-L/usr/lib64/blas/reference -lsuperlu -lblas -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3
Not searching for unused variables given on the command line.
loading initial cache file /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/gentoo_common_config.cmake
-- Configuring Armadillo 6.200.3
-- The CXX compiler identification is GNU 6.4.0
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CMAKE_SYSTEM_NAME = Linux
-- CMAKE_CXX_COMPILER_ID = GNU
-- CMAKE_CXX_COMPILER_VERSION = 6.4.0
-- CMAKE_COMPILER_IS_GNUCXX = 1
-- MKL_FOUND =
-- ACMLMP_FOUND =
-- ACML_FOUND =
-- OpenBLAS_FOUND =
-- ATLAS_FOUND =
-- BLAS_FOUND = ON
-- LAPACK_FOUND = ON
-- ARPACK_FOUND = ON
-- SuperLU_FOUND = ON
-- SuperLU_INCLUDE_DIR =
--
-- *** Armadillo wrapper library will use the following libraries:
-- *** ARMA_LIBS = -L/usr/lib64/blas/reference -lblas;-L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas;-L/usr/lib64/blas/reference -L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -larpack -lblas -llapack -lblas
--
-- Detected gcc 4.8.3 or later. Added '-std=c++11' to compiler flags
-- Copying /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/include/ to /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/tmp/include/
-- Generating /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/tmp/include/config.hpp
-- Generating /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/examples/Makefile
-- CMAKE_CXX_FLAGS = -march=native -O2 -pipe -std=c++11 -O2
-- CMAKE_SHARED_LINKER_FLAGS = -Wl,-O1 -Wl,--as-needed -Wl,--no-as-needed
-- CMAKE_REQUIRED_INCLUDES =
-- CMAKE_INSTALL_PREFIX = /usr
-- INSTALL_LIB_DIR = /usr/lib64
-- INSTALL_INCLUDE_DIR = /usr/include
-- INSTALL_DATA_DIR = /usr/share
-- INSTALL_BIN_DIR = /usr/bin
-- Generating '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/ArmadilloConfig.cmake'
-- Generating '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/ArmadilloConfigVersion.cmake'
-- Generating '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/InstallFiles/ArmadilloConfig.cmake'
-- Generating '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/InstallFiles/ArmadilloConfigVersion.cmake'
-- <<< Gentoo configuration >>>
Build type Gentoo
Install path /usr
Compiler flags:
C
C++ -march=native -O2 -pipe -std=c++11 -O2
Linker flags:
Executable -Wl,-O1 -Wl,--as-needed
Module -Wl,-O1 -Wl,--as-needed
Shared -Wl,-O1 -Wl,--as-needed -Wl,--no-as-needed
-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3"
make -j8 VERBOSE=1
/usr/bin/cmake -H/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 -B/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/CMakeFiles /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
make -f CMakeFiles/armadillo.dir/build.make CMakeFiles/armadillo.dir/depend
make[2]: Entering directory '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
cd /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3 /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/CMakeFiles/armadillo.dir/DependInfo.cmake --color=
Dependee "/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/CMakeFiles/armadillo.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/CMakeFiles/armadillo.dir/depend.internal".
Dependee "/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/CMakeFiles/armadillo.dir/depend.internal".
Scanning dependencies of target armadillo
make[2]: Leaving directory '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
make -f CMakeFiles/armadillo.dir/build.make CMakeFiles/armadillo.dir/build
make[2]: Entering directory '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
[ 50%] Building CXX object CMakeFiles/armadillo.dir/src/wrapper.cpp.o
/usr/bin/x86_64-pc-linux-gnu-g++ -Darmadillo_EXPORTS -I/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/tmp/include -DNDEBUG -march=native -O2 -pipe -std=c++11 -O2 -fPIC -o CMakeFiles/armadillo.dir/src/wrapper.cpp.o -c /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/src/wrapper.cpp
In file included from /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/src/wrapper.cpp:27:0:
/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/tmp/include/armadillo_bits/include_superlu.hpp:91:53: fatal error: /supermatrix.h: No such file or directory
#include ARMA_INCFILE_WRAP(ARMA_SLU_SUPERMATRIX_H)
^
compilation terminated.
make[2]: *** [CMakeFiles/armadillo.dir/build.make:63: CMakeFiles/armadillo.dir/src/wrapper.cpp.o] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
make[1]: *** [CMakeFiles/Makefile2:68: CMakeFiles/armadillo.dir/all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
make: *** [Makefile:130: all] Error 2
* ERROR: sci-libs/armadillo-6.200.3::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=sci-libs/armadillo-6.200.3::gentoo'`,
* the complete build log and the output of `emerge -pqv '=sci-libs/armadillo-6.200.3::gentoo'`.
* The complete build log is located at '/var/tmp/portage/sci-libs/armadillo-6.200.3/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/sci-libs/armadillo-6.200.3/temp/environment'.
* Working directory: '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
* S: '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
>>> Failed to emerge sci-libs/armadillo-6.200.3, Log file:
>>> '/var/tmp/portage/sci-libs/armadillo-6.200.3/temp/build.log'
* Messages for package sci-libs/armadillo-6.200.3:
* ERROR: sci-libs/armadillo-6.200.3::gentoo failed (compile phase):
* emake failed
*
* If you need support, post the output of `emerge --info '=sci-libs/armadillo-6.200.3::gentoo'`,
* the complete build log and the output of `emerge -pqv '=sci-libs/armadillo-6.200.3::gentoo'`.
* The complete build log is located at '/var/tmp/portage/sci-libs/armadillo-6.200.3/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/sci-libs/armadillo-6.200.3/temp/environment'.
* Working directory: '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
* S: '/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3'
|
...the erroneus part being
| Code: |
[ 50%] Building CXX object CMakeFiles/armadillo.dir/src/wrapper.cpp.o
/usr/bin/x86_64-pc-linux-gnu-g++ -Darmadillo_EXPORTS -I/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/tmp/include -DNDEBUG -march=native -O2 -pipe -std=c++11 -O2 -fPIC -o CMakeFiles/armadillo.dir/src/wrapper.cpp.o -c /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/src/wrapper.cpp
In file included from /var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/src/wrapper.cpp:27:0:
/var/tmp/portage/sci-libs/armadillo-6.200.3/work/armadillo-6.200.3/tmp/include/armadillo_bits/include_superlu.hpp:91:53: fatal error: /supermatrix.h: No such file or directory
#include ARMA_INCFILE_WRAP(ARMA_SLU_SUPERMATRIX_H)
^
compilation terminated.
|
SuperLU has been merged and is where it is supposed to be (/usr/include/superlu), and also supermatrix.h is in the ./superlu - folder (I also copied supermatrix.h into /usr/include, however, this doesn't change anything). What I do not understand is, e.g., this line:
| Code: |
-DSuperLU_FOUND=ON -DSuperLU_LIBRARIES=-L/usr/lib64/blas/reference -lsuperlu -lblas
|
Does that mean that the builder looks for superlu-libraries in the /blas/reference - folder? Should it be like this? Also,
| Code: | | SuperLU_INCLUDE_DIR= |
is empty, maybe there should be something?
Any idea why this error happens and how to solve it?
Thanks in advance! |
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fedeliallalinea
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Osmium_Dresden
n00b
Joined: 13 Apr 2018
Posts: 8
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| Posted: Tue Apr 24, 2018 8:50 am Post subject: |
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| Thanks! I wasn't aware of bugs.gentoo.org yet. |
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