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jjovel
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Joined: 23 Nov 2017
Posts: 1

PostPosted: Thu Nov 23, 2017 2:04 am    Post subject: Problem installing RSTUDIO in Gentoo Reply with quote

I run 4.12.3-gentoo in my desktop.

I updated my R from 3.2.2 to 3.4.2, then my RSTUDIO stopped working, I tried to reinstall RSTUDIO without success. The last error message is the following (ANY HELP?:

Code:
sudo emerge -j4 sci-mathematics/rstudio
Password:

 * IMPORTANT: 1 news items need reading for repository 'gentoo'.
 * Use eselect news read to view new items.

Calculating dependencies... done!
>>> Verifying ebuild manifests
>>> Emerging (1 of 1) sci-mathematics/rstudio-1.1.368::gentoo
>>> Failed to emerge sci-mathematics/rstudio-1.1.368, Log file:
>>>  '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/temp/build.log'
>>> Jobs: 0 of 1 complete, 1 failed                 Load avg: 1.10, 0.89, 1.89
 * Package:    sci-mathematics/rstudio-1.1.368
 * Repository: gentoo
 * Maintainer: gienah@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
 * Using: icedtea-bin-8
>>> Unpacking source...
>>> Unpacking rstudio-1.1.368.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work
>>> Unpacking gwt-2.7.0.zip to /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work
>>> Unpacking packrat-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/dependencies/common
>>> Unpacking rmarkdown-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/dependencies/common
>>> Unpacking shinyapps-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/dependencies/common
>>> Unpacking rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/dependencies/common
>>> Source unpacked in /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work
>>> Preparing source in /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368 ...
 * Applying rstudio-0.99.879-prefs.patch ...
 [ ok ]
 * Applying rstudio-1.0.44-paths.patch ...
 [ ok ]
 * Applying rstudio-1.1.357-clang-pandoc.patch ...
 [ ok ]
 * Applying rstudio-0.98.490-linker_flags.patch ...
 [ ok ]
 * Applying rstudio-0.98.1091-boost-1.57.patch ...
 [ ok ]
 * Applying rstudio-0.99.473-qtsingleapplication.patch ...
 [ ok ]
 * Applying rstudio-1.0.44-systemd.patch ...
 [ ok ]
mkdir: created directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/src/cpp/server/lib'
mkdir: created directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/src/cpp/server/lib/systemd'
mkdir: created directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/src/cpp/server/lib/systemd/system'
'/var/tmp/portage/sci-mathematics/rstudio-1.1.368/files/rstudio-server.service.in' -> '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368/src/cpp/server/lib/systemd/system/rstudio-server.service.in'
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build"
cmake -C /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DDISTRO_SHARE=share/rstudio -DRSTUDIO_INSTALL_FREEDESKTOP=ON -DRSTUDIO_TARGET=Desktop -DQT_QMAKE_EXECUTABLE=/usr/lib64/qt5/bin/qmake -DRSTUDIO_VERIFY_R_VERSION=FALSE -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368
loading initial cache file /var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.63.0
-- Found the following Boost libraries:
--   date_time
--   filesystem
--   iostreams
--   program_options
--   regex
--   signals
--   system
--   thread
--   chrono
--   random
--   atomic
-- Using system Boost 1.63.0
-- Performing Test HAVE_SCANDIR_POSIX
-- Performing Test HAVE_SCANDIR_POSIX - Success
-- Looking for SA_NOCLDWAIT
-- Looking for SA_NOCLDWAIT - found
-- Looking for SO_PEERCRED
-- Looking for SO_PEERCRED - found
-- Looking for inotify_init1
-- Looking for inotify_init1 - found
-- Looking for getpeereid
-- Looking for getpeereid - not found
-- Looking for setresuid
-- Looking for setresuid - found
-- Could not find libR shared library.
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:137 (message):
  Could NOT find LibR (missing: LIBR_LIBRARIES)
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:377 (_FPHSA_FAILURE_MESSAGE)
  cmake/modules/FindLibR.cmake:179 (find_package_handle_standard_args)
  src/cpp/CMakeLists.txt:271 (find_package)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build/CMakeFiles/CMakeError.log".
 * ERROR: sci-mathematics/rstudio-1.1.368::gentoo failed (configure phase):
 *   cmake failed
 *
 * Call stack:
 *     ebuild.sh, line  124:  Called src_configure
 *   environment, line 5827:  Called cmake-utils_src_configure
 *   environment, line 1040:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 *
 * If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-1.1.368::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-1.1.368::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=icedtea-bin-8  CLASSPATH="" JAVA_HOME="/opt/icedtea-bin-3.5.1"
JAVACFLAGS="-source 1.8 -target 1.8" COMPILER=""
and of course, the output of emerge --info =rstudio-1.1.368
 * The complete build log is located at '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build'
 * S: '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368'

 * Messages for package sci-mathematics/rstudio-1.1.368:

 * ERROR: sci-mathematics/rstudio-1.1.368::gentoo failed (configure phase):
 *   cmake failed
 *
 * Call stack:
 *     ebuild.sh, line  124:  Called src_configure
 *   environment, line 5827:  Called cmake-utils_src_configure
 *   environment, line 1040:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 *
 * If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-1.1.368::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-1.1.368::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368_build'
 * S: '/var/tmp/portage/sci-mathematics/rstudio-1.1.368/work/rstudio-1.1.368'

)

[Moderator edit: added [code] tags to preserve output layout. -Hu]
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