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sidkdbl07 Apprentice
Joined: 25 May 2003 Posts: 184
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Posted: Tue May 31, 2005 5:01 pm Post subject: DCM Images |
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I have some Dicom (.dcm) images that I nee to open. Does anybody know of a software that opens the dicom format?
I have tried Gimp, but have been unsuccessful. |
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Z? Tux's lil' helper
Joined: 22 Jan 2003 Posts: 118 Location: Waterloo, Ontario, Canada
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Posted: Sat Jun 11, 2005 2:19 pm Post subject: |
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Wow. That was unexpected - it's not too often I hear somebody talking about DICOM outside of work...
I know that there's a PHP PEAR module that'll read 'em, and allow you to dump the DICOM info/pixel data to separate places, but it'd require writing a PHP script to do it. In Windows, there's a nifty program called DICOMWorks that's pretty slick, but I haven't heard of anything for Linux.
I'd definitely be interested in it, though... |
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rukka n00b
Joined: 31 Dec 2004 Posts: 47 Location: Hesse
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Posted: Mon Jun 13, 2005 4:29 pm Post subject: |
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Hello sidkdbl07 and Z?
For Dicom files (.dcm, .acr) you could try "display" from the media-gfx/imagemagick package, try the none-opensource x11-misc/xnview (never tried it) or just use The Gimp. By default Gentoo installs a dicom plugin (/usr/lib/gimp/2.0/plug-ins/dicom) but you have to load it manuelly.
Have fun, bye: rukka |
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sidkdbl07 Apprentice
Joined: 25 May 2003 Posts: 184
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Posted: Sat Jul 30, 2005 4:42 am Post subject: |
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I could have swore I tried the Gimp without success before....
It works now though! Goodie! |
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Flummi n00b
Joined: 23 Oct 2002 Posts: 13 Location: Erfurt (Germany)
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nutznboltz Apprentice
Joined: 23 Apr 2004 Posts: 239
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Posted: Sat Jul 14, 2007 2:43 pm Post subject: Need Help with DICOM image files |
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Dear Loyal Gentooists,
I have received a CD-ROM containing important medical images of my good friend.
I am unable to read them since they are in DIACOM format.
http://www.sph.sc.edu/comd/rorden/dicom.html
Can someone please assist me with viewing them?
Thanks |
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nixnut Bodhisattva
Joined: 09 Apr 2004 Posts: 10974 Location: the dutch mountains
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Posted: Sat Jul 14, 2007 2:56 pm Post subject: |
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merged above post here. _________________ Please add [solved] to the initial post's subject line if you feel your problem is resolved. Help answer the unanswered
talk is cheap. supply exceeds demand |
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nutznboltz Apprentice
Joined: 23 Apr 2004 Posts: 239
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Posted: Sat Jul 14, 2007 10:36 pm Post subject: |
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nixnut wrote: | merged above post here. |
Strangely I started out by searching on "DICOM". Oh well... |
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guid0 Guru
Joined: 06 Jul 2003 Posts: 370 Location: The Netherlands / Nederland
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Posted: Sat Jul 12, 2014 1:18 pm Post subject: |
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I found myself in need of a DICOM viewer once again after a while. I got Ginkgo to work once on a non-gentoo (read ubuntu) system which has been reinstalled many times after now.
http://ginkgo-cadx.com/en/
Gonna try again on my gentoo box now. Perhaps this application will make its way into portage one day |
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gerard27 Advocate
Joined: 04 Jan 2004 Posts: 2377 Location: Netherlands
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Posted: Sat Jul 12, 2014 6:38 pm Post subject: |
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@guid0,
Gimp-2.8.10 will open them.
It's in portage,checked it on my own box.
Gerard. _________________ To install Gentoo I use sysrescuecd.Based on Gentoo,has firefox to browse Gentoo docs and mc to browse (and edit) files.
The same disk can be used for 32 and 64 bit installs.
You can follow the Handbook verbatim.
http://www.sysresccd.org/Download |
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guid0 Guru
Joined: 06 Jul 2003 Posts: 370 Location: The Netherlands / Nederland
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Posted: Sun Jul 13, 2014 8:12 am Post subject: |
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Seems that my Gimp cannot handle the images. Not sure if im missing a useflag:
Code: | [ebuild R ] media-gfx/gimp-2.8.10-r1:2 USE="alsa bzip2 dbus exif jpeg mmx png postscript python sse svg tiff -aalib (-altivec) (-aqua) -curl -debug -doc -gnome -jpeg2k -lcms -mng -pdf -smp -udev -webkit -wmf -xpm" LINGUAS="en_GB nl -am -ar -ast -az -be -bg -br -ca -ca@valencia -cs -csb -da -de -dz -el -en_CA -eo -es -et -eu -fa -fi -fr -ga -gl -gu -he -hi -hr -hu -id -is -it -ja -ka -kk -km -kn -ko -lt -lv -mk -ml -ms -my -nb -nds -ne -nn -oc -pa -pl -pt -pt_BR -ro -ru -rw -si -sk -sl -sr -sr@latin -sv -ta -te -th -tr -tt -uk -vi -xh -yi -zh_CN -zh_HK -zh_TW" PYTHON_SINGLE_TARGET="python2_7 (-python2_6%)" PYTHON_TARGETS="python2_7 (-python2_6%)" 19,868 kB |
Gimp throws me the following combined errormessage:
Code: | DICOM image Message: '/mnt/cdrom/0000000006494400/0000000006581323/im_14/x0000.dcm' has a bpp of 0 which GIMP cannot handle.
GIMP Message : Opening '/mnt/cdrom/0000000006494400/0000000006581323/im_14/x0000.dcm' failed: Procedure 'file-dicom-load' returned no return values |
And getting Ginkgo-CADx to build is stuck at detecting the portage-installed ITK. |
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gerard27 Advocate
Joined: 04 Jan 2004 Posts: 2377 Location: Netherlands
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Posted: Sun Jul 13, 2014 1:18 pm Post subject: |
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This is what I get: Code: |
[ebuild R ] media-gfx/gimp-2.8.10-r1:2 USE="aalib alsa bzip2 dbus doc exif jpeg jpeg2k lcms mmx mng pdf png postscript python smp sse svg tiff udev webkit (-altivec) (-aqua) -curl -debug -gnome -wmf -xpm" LINGUAS="nl -am -ar -ast -az -be -bg -br -ca -ca@valencia -cs -csb -da -de -dz -el -en_CA -en_GB -eo -es -et -eu -fa -fi -fr -ga -gl -gu -he -hi -hr -hu -id -is -it -ja -ka -kk -km -kn -ko -lt -lv -mk -ml -ms -my -nb -nds -ne -nn -oc -pa -pl -pt -pt_BR -ro -ru -rw -si -sk -sl -sr -sr@latin -sv -ta -te -th -tr -tt -uk -vi -xh -yi -zh_CN -zh_HK -zh_TW" PYTHON_SINGLE_TARGET="python2_7 (-python2_6%)" PYTHON_TARGETS="python2_7 (-python2_6%)" 0 kB
Total: 1 package (1 reinstall), Size of downloads: 0 kB
ikke@localhost ~ $ |
As you can see I have a lot more flags enabled.
I tried to find DICOM files on the internet but don't know how to d/l them.
When I do "File Open" in Gimp I get a window with in the bottom right a button "All Files" or "All Images".
When I click it I get a dropdown menu with all the filetypes gimp can open.
It contains "DICOM image (*.dcm *.dicom)"
According to what I found on the internet Gimp and Imagemagick are Linux programs that can open them.
Sorry if this doesn't help.
Gerard.
. _________________ To install Gentoo I use sysrescuecd.Based on Gentoo,has firefox to browse Gentoo docs and mc to browse (and edit) files.
The same disk can be used for 32 and 64 bit installs.
You can follow the Handbook verbatim.
http://www.sysresccd.org/Download |
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guid0 Guru
Joined: 06 Jul 2003 Posts: 370 Location: The Netherlands / Nederland
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Posted: Sun Jul 13, 2014 1:55 pm Post subject: |
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Tnx for the response. Much appreciated!
I changed my useflags to match your but it did unfortunately not seem to help. I noticed that the Gimp is able to open some files, but far from all. About 1 in 25 images.
Guess im gonna spend some more time in getting Ginkgo-CADx to compile |
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mjpan n00b
Joined: 14 Jul 2014 Posts: 1
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guid0 Guru
Joined: 06 Jul 2003 Posts: 370 Location: The Netherlands / Nederland
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Posted: Tue Jul 15, 2014 6:57 am Post subject: |
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Thanks for the suggestion but using a on-line service would have too much of an impact on privacy. |
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