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rustyscience
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PostPosted: Tue Oct 22, 2013 12:13 pm    Post subject: sci-mathematics/gap-4.6.5 hangs at doins Reply with quote

Hi all Gentoo users!
I've added sage-on-gentoo overlay, and trying to install sage. But one of the dependencies does not install
>>> Install gap-4.6.5 into /var/tmp/portage/sci-mathematics/gap-4.6.5/image/ category sci-mathematics
It hangs, I hit ^C, and it claims
Code:
QA Notice: file does not exist:
doins: pkg/factint/tables/brent/brfac15 does not exist
doins: pkg/factint/tables/brent/brfac5011 does not exist


Full error log:
Code:

Exiting on signal 2
sandbox:stop  signal already caught and busy still cleaning up!
sandbox:stop  caught signal 2 in pid 11688
Traceback (most recent call last):
  File "/usr/lib/portage/bin/install.py", line 11, in <module>
    from portage.util._argparse import ArgumentParser
  File "/usr/lib/portage/pym/portage/__init__.py", line 21, in <module>
    import platform
  File "/usr/lib/python2.7/platform.py", line 245, in <module>
    _lsb_release_version = re.compile(r'(.+)'
  File "/usr/lib/python2.7/re.py", line 190, in compile
    return _compile(pattern, flags)
  File "/usr/lib/python2.7/re.py", line 240, in _compile
    p = sre_compile.compile(pattern, flags)
  File "/usr/lib/python2.7/sre_compile.py", line 501, in compile
    p = sre_parse.parse(p, flags)
  File "/usr/lib/python2.7/sre_parse.py", line 686, in parse
    p = _parse_sub(source, pattern, 0)
  File "/usr/lib/python2.7/sre_parse.py", line 309, in _parse_sub
    itemsappend(_parse(source, state))
  File "/usr/lib/python2.7/sre_parse.py", line 646, in _parse
    p = _parse_sub(source, state)
KeyboardInterrupt
!!! doins: pkg/factint/tables/brent/brfac15 does not exist
^Csandbox:stop  signal already caught and busy still cleaning up!
Traceback (most recent call last):
  File "/usr/lib/portage/bin/install.py", line 11, in <module>
    from portage.util._argparse import ArgumentParser
  File "/usr/lib/portage/pym/portage/__init__.py", line 21, in <module>
    import platform
  File "/usr/lib/python2.7/platform.py", line 244, in <module>
    _release_filename = re.compile(r'(\w+)[-_](release|version)')
  File "/usr/lib/python2.7/re.py", line 190, in compile
    return _compile(pattern, flags)
  File "/usr/lib/python2.7/re.py", line 240, in _compile
    p = sre_compile.compile(pattern, flags)
  File "/usr/lib/python2.7/sre_compile.py", line 505, in compile
    code = _code(p, flags)
  File "/usr/lib/python2.7/sre_compile.py", line 490, in _code
    _compile(code, p.data, flags)
  File "/usr/lib/python2.7/sre_compile.py", line 102, in _compile
    _compile(code, av[1], flags)
  File "/usr/lib/python2.7/sre_compile.py", line 41, in _compile
    for op, av in pattern:
  File "/usr/lib/python2.7/sre_parse.py", line 131, in __getitem__
    def __getitem__(self, index):
KeyboardInterrupt
!!! doins: pkg/factint/tables/brent/brfac5011 does not exist
^Csandbox:stop  signal already caught and busy still cleaning up!

/var/lib/layman/sage-on-gentoo/sci-mathematics/gap/gap-4.6.5.ebuild: src_install aborted; exiting.

^Csandbox:stop  signal already caught and busy still cleaning up!
Sandboxed process killed by signal: Interrupt
 * QA Notice: file does not exist:
 *
 *      doins: pkg/factint/tables/brent/brfac15 does not exist
 *      doins: pkg/factint/tables/brent/brfac5011 does not exist
^Csandbox:stop  caught signal 2 in pid 31502
Sandboxed process killed by signal: Interrupt
 * The ebuild phase 'die_hooks' has exited unexpectedly. This type of
 * behavior is known to be triggered by things such as failed variable
 * assignments (bug #190128) or bad substitution errors (bug #200313).
 * Normally, before exiting, bash should have displayed an error message
 * above. If bash did not produce an error message above, it's possible
 * that the ebuild has called `exit` when it should have called `die`
 * instead. This behavior may also be triggered by a corrupt bash binary or
 * a hardware problem such as memory or cpu malfunction. If the problem is
 * not reproducible or it appears to occur randomly, then it is likely to
 * be triggered by a hardware problem. If you suspect a hardware problem
 * then you should try some basic hardware diagnostics such as memtest.
 * Please do not report this as a bug unless it is consistently
 * reproducible and you are sure that your bash binary and hardware are
 * functioning properly.
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eyoung100
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PostPosted: Tue Oct 22, 2013 4:36 pm    Post subject: Reply with quote

Code:
equery belongs pkg/factint/tables/brent/brfac15
equery belongs pkg/factint/tables/brent/brfac5011
equery files sci-mathematics/gap

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rustyscience
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PostPosted: Tue Oct 22, 2013 5:40 pm    Post subject: Reply with quote

Code:
$ equery belongs pkg/factint/tables/brent/brfac15
 * Searching for pkg/factint/tables/brent/brfac15 ...
$ equery files sci-mathematics/gap
 * Searching for gap in sci-mathematics ...
!!! No installed packages matching 'sci-mathematics/gap'


These files (as I can find http://rpmfind.net/linux/RPM/mandriva/2011/x86_64/media/contrib/release/gap-system-packages-4.4.12-10.x86_64.html) used to belong to gap, which cannot be emerged in the first place
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eyoung100
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PostPosted: Tue Oct 22, 2013 5:52 pm    Post subject: Reply with quote

Try a different overlay or older version 1st.
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rustyscience
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PostPosted: Wed Oct 23, 2013 8:01 am    Post subject: Reply with quote

solved! gap-4.6.5 merged. It just took way more time than I had expected.
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