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exclarinetist
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PostPosted: Sun Mar 31, 2013 2:12 am    Post subject: Help with fixing a multiple instances in one slot error Reply with quote

RESOLVED

Hello,

I think I've at least minorly messed up portage on my computer. I'm still fairly new to Gentoo (3 months in) and this is the first time I've run into this problem.

While attempting to emerge the latest gentoo-sources portage is displaying this error.

Code:

!!! Multiple package instances within a single package slot have been pulled
!!! into the dependency graph, resulting in a slot conflict:

virtual/udev:0

  (virtual/udev-171::gentoo, installed) pulled in by
    <virtual/udev-196 required by (sys-fs/lvm2-2.02.88::gentoo, installed)

  (virtual/udev-197-r1::gentoo, ebuild scheduled for merge) pulled in by
    >=virtual/udev-197-r1 required by (sys-fs/udev-197-r8::gentoo, ebuild scheduled for merge)
    =virtual/udev-197-r1[gudev] required by (gnome-base/gvfs-1.12.3::gentoo, installed)
    (and 13 more with the same problems)

sys-fs/udev:0

  (sys-fs/udev-171-r9::gentoo, installed) pulled in by
    ~sys-fs/udev-171[gudev?,hwdb?,introspection?,keymap?,selinux?] required by (virtual/udev-171::gentoo, installed)
    <sys-fs/udev-185 required by (net-wireless/bluez-4.99::gentoo, installed)

  (sys-fs/udev-197-r8::gentoo, ebuild scheduled for merge) pulled in by
    >=sys-fs/udev-197-r8[gudev?,hwdb?,introspection?,keymap?,kmod?,selinux?,static-libs?] required by (virtual/udev-197-r1::gentoo, ebuild scheduled for merge)


It may be possible to solve this problem by using package.mask to
prevent one of those packages from being selected. However, it is also
possible that conflicting dependencies exist such that they are
impossible to satisfy simultaneously.  If such a conflict exists in
the dependencies of two different packages, then those packages can
not be installed simultaneously.

For more information, see MASKED PACKAGES section in the emerge man
page or refer to the Gentoo Handbook.


!!! The following installed packages are masked:
- sys-fs/lvm2-2.02.88::gentoo (masked by: package.mask)
/usr/portage/profiles/package.mask:
# Samuli Suominen <ssuominen@gentoo.org> (07 Mar 2013)
# Remove redudant version of udev now that 197-r8 will
# work down to Linux 2.6.32.60 on most arches.
# Removal in 90 days.

For more information, see the MASKED PACKAGES section in the emerge
man page or refer to the Gentoo Handbook.


Here's what the dependencies look like on my system:

Code:

Calculating dependencies 
 * IMPORTANT: 8 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.

..... done!
[ebuild  NS    ] sys-kernel/gentoo-sources-3.7.10 [3.5.7, 3.7.9] USE="-build -deblob -symlink"
[ebuild  N     ] sys-apps/kmod-12-r1  USE="tools zlib -debug -doc -lzma -static-libs"
[uninstall     ] sys-apps/module-init-tools-3.16-r1
[blocks b      ] sys-apps/kmod ("sys-apps/kmod" is blocking sys-apps/module-init-tools-3.16-r1)
[blocks b      ] sys-apps/module-init-tools ("sys-apps/module-init-tools" is blocking sys-apps/kmod-12-r1)
[ebuild     U  ] sys-fs/udev-197-r8 [171-r9] USE="acl%* kmod%* openrc%* -doc% -static-libs%"
[ebuild     U  ] virtual/udev-197-r1 [171] USE="kmod%*"
[ebuild     U  ] sys-apps/hwids-20130302 [20121119] USE="udev%*"
[ebuild  N     ] sys-fs/udev-init-scripts-23
[blocks B      ] <sys-fs/lvm2-2.02.97-r1 ("<sys-fs/lvm2-2.02.97-r1" is blocking sys-fs/udev-197-r8)
[blocks B      ] <sys-fs/udev-186 ("<sys-fs/udev-186" is blocking sys-fs/udev-init-scripts-23)
[blocks B      ] <sys-apps/openrc-0.9.9 ("<sys-apps/openrc-0.9.9" is blocking sys-fs/udev-197-r8)


What is my best course of action to take to fix this error? And in the future, what's the best thing to do to prevent this from happening (if there is a way)?[/gwn]
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gcc: x86_64-pc-linux-gnu-4.5.4


Last edited by exclarinetist on Sun Apr 28, 2013 8:51 pm; edited 1 time in total
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PostPosted: Sun Mar 31, 2013 3:35 am    Post subject: Reply with quote

Code:
emerge --unmerge udev virtual/udev
emerge -1 --no-deps udev
emerge -1 --no-deps virtual/udev

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PostPosted: Sun Apr 28, 2013 6:14 pm    Post subject: Reply with quote

I wasn't able to perform

Code:
emerge -1 --nodeps udev


The emerge failed. Here's the result of emerge --info '=sys-fs/udev-200'

Code:

Portage 2.1.11.52 (default/linux/amd64/13.0/desktop, gcc-4.5.4, glibc-2.15-r3, 3.5.7-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.5.7-gentoo-x86_64-AMD_Athlon-tm-_II_X4_635_Processor-with-gentoo-2.1
KiB Mem:     4049600 total,   2421304 free
KiB Swap:    1048572 total,   1048572 free
Timestamp of tree: Sun, 28 Apr 2013 18:00:01 +0000
ld GNU ld (GNU Binutils) 2.22
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.3-r2, 3.2.3
dev-util/cmake:           2.8.9
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.9.8.4
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.11.6
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.4.7, 4.5.4
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.4-r2 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo x-portage
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -march=native"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.osuosl.org/ ftp://mirror.iawnet.sandia.gov/pub/gentoo/"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow X a52 aac acl acpi alsa amd64 bash-completion berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam ffmpeg firefox flac fortran ftp gdbm gif gpm gstreamer gtk gzip iconv ipv6 jack jpeg jpeg2k lcms ldap libnotify mad mime mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds qt3support readline samba sdl session smp sockets sound spell sse sse2 ssl startup-notification svg tcpd threads tiff truetype udev udisks unicode upower usb v4l vorbis wxwidgets x264 xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" QEMU_SOFTMMU_TARGETS="arm mips64 mips i386 x86_64" QEMU_USER_TARGETS="arm x86_64" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

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PostPosted: Sun Apr 28, 2013 6:25 pm    Post subject: Reply with quote

I was able to fix the last problem by

Code:
emerge sys-apps/kmod


I've executed all of your commands. However, I'm now having blocked package problems again trying to get all of the newest udev's dependencies installed too (I heard you are supposed to run the emerge again without the --nodeps option afterwards)

Here's the latest output of trying to emerge udev:

Code:

# emerge udev

 * IMPORTANT: 9 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.

Calculating dependencies... done!
[ebuild   R    ] sys-fs/udev-200
[ebuild  N     ] sys-fs/udev-init-scripts-25
[ebuild     U  ] sys-apps/hwids-20130329 [20121119] USE="udev%*"
[blocks B      ] <sys-fs/lvm2-2.02.97-r1 ("<sys-fs/lvm2-2.02.97-r1" is blocking sys-fs/udev-200)
[blocks B      ] <sys-apps/openrc-0.9.9 ("<sys-apps/openrc-0.9.9" is blocking sys-fs/udev-200)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (sys-fs/lvm2-2.02.88::gentoo, installed) pulled in by
    >=sys-fs/lvm2-2.02.66 required by (sys-fs/udisks-1.0.4-r2::gentoo, installed)

  (sys-apps/openrc-0.9.8.4::gentoo, installed) pulled in by
    sys-apps/openrc required by (sys-apps/baselayout-2.1-r1::gentoo, installed)
    sys-apps/openrc required by (sys-fs/udev-init-scripts-25::gentoo, ebuild scheduled for merge)

  (sys-fs/udev-200::gentoo, ebuild scheduled for merge) pulled in by
    >=sys-fs/udev-171-r6[gudev] required by (sys-power/upower-0.9.18::gentoo, installed)
    >=sys-fs/udev-169 required by (net-wireless/bluez-4.99::gentoo, installed)
    >=sys-fs/udev-171[gudev] required by (gnome-base/gvfs-1.12.3::gentoo, installed)
    udev
    >=sys-fs/udev-142 required by (media-video/vlc-2.0.3::gentoo, installed)
    >=sys-fs/udev-197-r8[gudev,hwdb,introspection,keymap,kmod] required by (virtual/udev-197-r3::gentoo, installed)
    >=sys-fs/udev-150 required by (x11-base/xorg-server-1.13.0-r1::gentoo, installed)
    >=sys-fs/udev-151-r4 required by (sys-fs/lvm2-2.02.88::gentoo, installed)


What's the best way to resolve the lvm2 and openrc package blocking problems here?
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PostPosted: Sun Apr 28, 2013 6:29 pm    Post subject: Reply with quote

try
Code:
emerge virtual/udev

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PostPosted: Sun Apr 28, 2013 6:40 pm    Post subject: Reply with quote

Code:
emerge virtual/udev
worked. But I'm still getting the same errors from trying to emerge udev. Thanks for responding so quickly to this thread even though it's very old. I've been busy with school and no time to fix my install :/
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PostPosted: Sun Apr 28, 2013 6:55 pm    Post subject: Reply with quote

if you have anything important in an lvm volume this could get dangerous, I don't use lvm
put
Quote:
=sys-fs/lvm2-2.02.98 ~amd64
into /etc/portage/package.keywords;
Code:
emerge lvm2

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PostPosted: Sun Apr 28, 2013 7:04 pm    Post subject: Reply with quote

I wasn't able to emerge lvm2, but it looks like I'm getting rid of errors:

Code:
# emerge lvm2

 * IMPORTANT: 9 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.

Calculating dependencies... done!
[ebuild  N     ] sys-block/thin-provisioning-tools-0.1.5-r1
[ebuild     U ~] sys-fs/lvm2-2.02.98 [2.02.88] USE="thin%* udev%* -static* -static-libs*"
[blocks B      ] <sys-apps/openrc-0.10.1 ("<sys-apps/openrc-0.10.1" is blocking sys-fs/lvm2-2.02.98)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (sys-apps/openrc-0.9.8.4::gentoo, installed) pulled in by
    sys-apps/openrc required by (sys-apps/baselayout-2.1-r1::gentoo, installed)

  (sys-fs/lvm2-2.02.98::gentoo, ebuild scheduled for merge) pulled in by
    >=sys-fs/lvm2-2.02.66 required by (sys-fs/udisks-1.0.4-r2::gentoo, installed)
    lvm2


For the openrc problem, should I just unmerge openrc, re-emerge it without any deps, then emerge lvm2, then emerge udev? Or will that really mess up my system unmerging and re-emerging openrc?[/code]
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PostPosted: Sun Apr 28, 2013 7:12 pm    Post subject: Reply with quote

Code:
emerge -av openrc
if it will run, run it; if not what complaints?
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PostPosted: Sun Apr 28, 2013 7:24 pm    Post subject: Reply with quote

Code:
emerge -av udisks
if it will run, run it; if not what complaints?
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PostPosted: Sun Apr 28, 2013 7:26 pm    Post subject: Reply with quote

openrc merged just fine :D However, lvm2 is still another story. Emerge lvm2 doesn't complain about blocked packages, any more. But now I get this error when I'm attempting to emerge it:
Code:

* ERROR: sys-fs/lvm2-2.02.98 failed (prepare phase):
 *   internal error: add AC_CONFIG_HEADER to ALL_AUTOTOOLS_MACROS
 *
 * Call stack:
 *     ebuild.sh, line   93:  Called src_prepare
 *   environment, line 3678:  Called eautoreconf
 *   environment, line 1063:  Called eautoheader
 *   environment, line  985:  Called _at_uses_autoheader
 *   environment, line  314:  Called _at_uses_pkg 'AC_CONFIG_HEADERS' 'AC_CONFIG_HEADER' 'AM_CONFIG_HEADERS' 'AM_CONFIG_HEADER'
 *   environment, line  346:  Called autotools_check_macro 'AC_CONFIG_HEADERS' 'AC_CONFIG_HEADER' 'AM_CONFIG_HEADERS' 'AM_CONFIG_HEADER'
 *   environment, line  529:  Called die
 * The specific snippet of code:
 *           has ${macro} ${ALL_AUTOTOOLS_MACROS[@]} || die "internal error: add ${macro} to ALL_AUTOTOOLS_MACROS";

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PostPosted: Sun Apr 28, 2013 7:28 pm    Post subject: Reply with quote

Code:
emerge -av baselayout
if it will run, run it; if not what complaints?
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PostPosted: Sun Apr 28, 2013 7:31 pm    Post subject: Reply with quote

Code:
emerge -av upower
if it will run, run it; if not what complaints?

sending these one at a time on purpose
BTW did you emerge --sync in the last day, if not, please do
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PostPosted: Sun Apr 28, 2013 7:34 pm    Post subject: Reply with quote

Code:
emerge -av udev-init-scripts
if it will run, run it; if not what complaints?
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PostPosted: Sun Apr 28, 2013 7:38 pm    Post subject: Reply with quote

DONAHUE wrote:
Code:
emerge -av udisks
if it will run, run it; if not what complaints?


I tried emerging this but I got the following error
Code:

 * Messages for package sys-fs/cryptsetup-1.4.3:

 *   CONFIG_DM_CRYPT:   is not set (required for cryptsetup)


What exactly does udisks do? I was looking at how to fix the error. However, it seems I will need to recompile my kernel. Am I going to end up locking myself out of my gentoo install if I recompile the kernel and reboot with udev not completely installed correctly?
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PostPosted: Sun Apr 28, 2013 7:43 pm    Post subject: Reply with quote

DONAHUE wrote:
Code:
emerge -av upower
if it will run, run it; if not what complaints?

sending these one at a time on purpose
BTW did you emerge --sync in the last day, if not, please do


Yep, before I started any of this work today I synced.

emerge -av udev-init-scripts baselayout power all worked. Still having problems with emerging lvm2 and udev however.
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PostPosted: Sun Apr 28, 2013 7:54 pm    Post subject: Reply with quote

Code:
emerge -av udev
post the results as before
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PostPosted: Sun Apr 28, 2013 8:00 pm    Post subject: Reply with quote

DONAHUE wrote:
Code:
emerge -av udev
post the results as before


Code:

# emerge -av udev

 * IMPORTANT: 9 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.


These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   R    ] sys-fs/udev-200  USE="acl firmware-loader gudev hwdb introspection keymap kmod openrc -doc (-selinux) -static-libs" 0 kB
[ebuild     U  ] sys-apps/hwids-20130329 [20121119] USE="udev%*" 1,464 kB
[blocks B      ] <sys-fs/lvm2-2.02.97-r1 ("<sys-fs/lvm2-2.02.97-r1" is blocking sys-fs/udev-200)

Total: 2 packages (1 upgrade, 1 reinstall), Size of downloads: 1,464 kB
Conflict: 1 block (1 unsatisfied)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (sys-fs/lvm2-2.02.88::gentoo, installed) pulled in by
    >=sys-fs/lvm2-2.02.66 required by (sys-fs/udisks-1.0.4-r2::gentoo, installed)

  (sys-fs/udev-200::gentoo, ebuild scheduled for merge) pulled in by
    >=sys-fs/udev-169 required by (net-wireless/bluez-4.99::gentoo, installed)
    >=sys-fs/udev-171[gudev] required by (gnome-base/gvfs-1.12.3::gentoo, installed)
    udev
    >=sys-fs/udev-142 required by (media-video/vlc-2.0.3::gentoo, installed)
    >=sys-fs/udev-197-r8[gudev,hwdb,introspection,keymap,kmod] required by (virtual/udev-197-r3::gentoo, installed)
    >=sys-fs/udev-150 required by (x11-base/xorg-server-1.13.0-r1::gentoo, installed)
    >=sys-fs/udev-151-r4 required by (sys-fs/lvm2-2.02.88::gentoo, installed)


Once again, thank you for your continuing help on this issue.
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exclarinetist
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PostPosted: Sun Apr 28, 2013 8:09 pm    Post subject: Reply with quote

Interestingly enough, I get a similar autotools error when trying to install networkmanager. This is just like the lvm2 error:

Code:

* Messages for package net-misc/networkmanager-0.9.6.4:

 * ERROR: net-misc/networkmanager-0.9.6.4 failed (prepare phase):
 *   internal error: add AC_CONFIG_HEADER to ALL_AUTOTOOLS_MACROS
 *
 * Call stack:
 *     ebuild.sh, line   93:  Called src_prepare
 *   environment, line 3733:  Called eautoreconf
 *   environment, line 1150:  Called eautoheader
 *   environment, line 1072:  Called _at_uses_autoheader
 *   environment, line  377:  Called _at_uses_pkg 'AC_CONFIG_HEADERS' 'AC_CONFIG_HEADER' 'AM_CONFIG_HEADERS' 'AM_CONFIG_HEADER'

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PostPosted: Sun Apr 28, 2013 8:31 pm    Post subject: Reply with quote

see https://forums.gentoo.org/viewtopic-t-958184-highlight-autotools.html for info about autotools problem neatly timed to mess with you
emerge --sync and try again
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PostPosted: Sun Apr 28, 2013 8:47 pm    Post subject: Reply with quote

DONAHUE wrote:
see https://forums.gentoo.org/viewtopic-t-958184-highlight-autotools.html for info about autotools problem neatly timed to mess with you
emerge --sync and try again


Excellent! I synced again and I was able to build everything. Thanks again for all of your help. lvm2, udev, and network manager have all installed perfectly.
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PostPosted: Sun Apr 28, 2013 9:00 pm    Post subject: Reply with quote

totally strange symptoms, good call by you staying after the autotools discrepancy, I was not giving it priority. hope the new lvm2 is still compatible
Are you doing a complete emerge -uND world ? recommended followed by
Code:
emerge python-updater lafilefixer perl-cleaner gentoolkit
python-updater
lafilefixer --justfixit
perl-cleaner all
revdep-rebuild
is good cleanup
follow with emerge -pv --depclean, look at the list and decide what to unmerge, if you accidentally unmerge the active kernel or some key package ....
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