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opennmpi can't be installed
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syn0ptik
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Joined: 09 Jan 2013
Posts: 233

PostPosted: Sun Jan 13, 2013 3:02 am    Post subject: opennmpi can't be installed Reply with quote

I've tryed with mpi-threads and not, anyway it does this error. I don't think that happening because emerge can't found udat.h file?
Code:
configure: WARNING: Expected file /usr/include/dat/udat.h not found
configure: error: Cannot continue

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sys-cluster/openmpi-1.6.3/work/openmpi-1.6.3/config.log
 * ERROR: sys-cluster/openmpi-1.6.3 failed (configure phase):
 *   econf failed
 *
 * Call stack:
 *          ebuild.sh, line   93:  Called src_configure
 *        environment, line 2680:  Called econf '--sysconfdir=/etc/openmpi' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--with-hwloc=/usr' '--enable-mpi-cxx' '--disable-io-romio' '--enable-heterogeneous' '--disable-ipv6' '--with-udapl=/usr' '--with-openib=/usr' '--with-knem=/usr' '--with-mx=/usr' '--with-psm=/usr' '--enable-openib-control-hdr-padding' '--enable-openib-connectx-xrc' '--enable-openib-rdmacm' '--enable-openib-dynamic-sl' '--enable-btl-openib-failover' '--with-sctp' '--without-tm' '--without-slurm'
 *   phase-helpers.sh, line  501:  Called die
 * The specific snippet of code:
 *                      die "econf failed"

port seems ready for amd64 platforms regard http://en.znurt.org/search.php?search=&q=openmpi&x=0&y=0
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tony-curtis
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Joined: 20 May 2006
Posts: 111

PostPosted: Sat Jan 19, 2013 8:10 pm    Post subject: Reply with quote

Looks to me like you're trying to build openmpi with support for some feature that's not installed. Initial suggestion is to run an emerge --deep -a world, then revdep-rebuild (from gentoolkit) to see if the system detects something that should be pulled in.
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syn0ptik
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PostPosted: Sat Jan 19, 2013 11:00 pm    Post subject: Reply with quote

yes, forgave about few features.
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tony-curtis
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PostPosted: Sun Jan 20, 2013 12:15 am    Post subject: Reply with quote

So, that fixed things?
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syn0ptik
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PostPosted: Sun Jan 20, 2013 12:30 am    Post subject: Reply with quote

there, disable dapl and psm
Code:
OPENMPI_FABRICS="knem ofed open-mx sctp -dapl -psm"
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