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danielhilst
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Joined: 19 Feb 2011
Posts: 35

PostPosted: Mon Apr 15, 2013 3:12 pm    Post subject: Problem emerging python-exec Reply with quote

I'm in trouble emerging python-exec-0.3.1. I'm trying to update @world but it fails in this ebuild.. with this message


Code:
checking whether we are cross compiling... configure: error: in `/var/tmp/portage/dev-python/python-exec-0.3.1/work/python-exec-0.3.1_build':
configure: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.


Code:
 * ERROR: dev-python/python-exec-0.3.1 failed (configure phase):
 *   econf failed
 *
 * Call stack:
 *          ebuild.sh, line   93:  Called src_configure
 *        environment, line 3960:  Called autotools-utils_src_configure
 *        environment, line  889:  Called econf '--docdir=/usr/share/doc/python-exec-0.3.1' '--with-eprefix=' '--with-python-impls= jython2.5 jython2.7 pypy-c1.9 pypy-c2.0 python3.1 python3.2 python3.3 python2.5 python2.6 python2.7'
 *   phase-helpers.sh, line  521:  Called die
 * The specific snippet of code:
 *            die "econf failed"
 *
 * If you need support, post the output of `emerge --info '=dev-python/python-exec-0.3.1'`,
 * the complete build log and the output of `emerge -pqv '=dev-python/python-exec-0.3.1'`.
 * The complete build log is located at '/var/tmp/portage/dev-python/python-exec-0.3.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-python/python-exec-0.3.1/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-python/python-exec-0.3.1/work/python-exec-0.3.1_build'
 * S: '/var/tmp/portage/dev-python/python-exec-0.3.1/work/python-exec-0.3.1'


Here is emerge --info python-exec
Code:
geckos@gentoo-x86 ~ $ emerge --info =dev-python/python-exec-0.3.1
Portage 2.1.11.55 (default/linux/x86/13.0/desktop, gcc-4.6.3, glibc-2.15-r3, 3.7.10-gentoo i686)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.7.10-gentoo-i686-Intel-R-_Core-TM-_i3_CPU_M_370_@_2.40GHz-with-gentoo-2.1
KiB Mem:     2970708 total,   1976368 free
KiB Swap:       3172 total,      3172 free
Timestamp of tree: Mon, 15 Apr 2013 12:00:01 +0000
ld GNU ld (GNU Binutils) 2.22
ccache version 3.1.9 [disabled]
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.12-r1
dev-lang/python:          2.7.3-r3, 3.2.3-r2
dev-util/ccache:          3.1.9
dev-util/cmake:           2.8.9
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.6.3
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.7 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i486-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CHOST="i486-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/openvpn/easy-rsa"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=native -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="ftp://ftp.las.ic.unicamp.br/pub/gentoo/"
LANG="pt_BR.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif gpm gtk iconv ipv6 jpeg lcms ldap libnotify lock mad mng modules mp3 mp4 mpeg mudflap ncurses nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds qt3support readline sdl session spell ssl startup-notification svg tcpd thunar tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 x86 xcb xinerama xml xv xvid zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON


I'm using a weird CHOST, I'm lazy to change this.. I don't know if has to do with my error... but.. here is my make.conf

Code:
geckos@gentoo-x86 ~ $ cat /etc/make.conf
# These settings were set by the catalyst build script that automatically
# built this stage.
# Please consult /usr/share/portage/config/make.conf.example for a more
# detailed example.
CFLAGS="-O2 -march=native -pipe"
CXXFLAGS="${CFLAGS}"
# WARNING: Changing your CHOST is not something that should be done lightly.
# Please consult http://www.gentoo.org/doc/en/change-chost.xml before changing.
CHOST="i486-pc-linux-gnu"
VIDEO_CARDS="intel"
MAKEOPTS="-j3"
USE="-qt4 -kde X gtk -gnome consolekit dbus jpeg lock session startup-notification thunar X pam policykit udev xinerama"

RUBY_TARGETS="ruby19"

# MIRRORS
GENTOO_MIRRORS="ftp://ftp.las.ic.unicamp.br/pub/gentoo/"


Cheers
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mgorny
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Joined: 27 Apr 2007
Posts: 52

PostPosted: Tue Apr 16, 2013 6:22 pm    Post subject: Re: Problem emerging python-exec Reply with quote

danielhilst wrote:
Code:
checking whether we are cross compiling... configure: error: in `/var/tmp/portage/dev-python/python-exec-0.3.1/work/python-exec-0.3.1_build':
configure: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.


This one's weird. I haven't seen that error near 'cross compiling' check yet.

danielhilst wrote:
I'm using a weird CHOST, I'm lazy to change this.. I don't know if has to do with my error... but.. here is my make.conf

Code:
# WARNING: Changing your CHOST is not something that should be done lightly.
# Please consult http://www.gentoo.org/doc/en/change-chost.xml before changing.
CHOST="i486-pc-linux-gnu"


Well, that theoretically can be a case. Do you have
Code:
i486-pc-linux-gnu-gcc
executable?
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dol-sen
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Posts: 2559
Location: Richmond, BC, Canada

PostPosted: Tue Apr 16, 2013 6:38 pm    Post subject: Reply with quote

Also, another possibility
Axs wrote:
that one's usually due to gcc-config not being run after a user did an emerge --depclean and removed their active gcc

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danielhilst
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PostPosted: Wed Apr 17, 2013 3:15 pm    Post subject: Reply with quote

I have this ones
Code:

gentoo-x86 ~ # gcc-config -l
 [1] i486-pc-linux-gnu-4.6.3 *
gentoo-x86 ~ # i486-pc-linux-gnu-gcc --version
i486-pc-linux-gnu-gcc (Gentoo 4.6.3 p1.11, pie-0.5.2) 4.6.3
Copyright (C) 2011 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

gentoo-x86 ~ #



Regards
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danielhilst
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PostPosted: Thu Apr 18, 2013 1:41 pm    Post subject: Reply with quote

Got this, on config.log
Code:

configure:3297: checking whether we are cross compiling
configure:3305: i486-pc-linux-gnu-gcc -o conftest -O2 -march=native -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
In file included from /usr/include/stdio.h:28:0,
                 from conftest.c:14:
/usr/include/features.h:358:25: fatal error: sys/cdefs.h: No such file or directory
compilation terminated.
configure:3309: $? = 1
configure:3316: ./conftest
/var/tmp/portage/dev-python/python-exec-0.3.1/work/python-exec-0.3.1/configure: line 3318: ./conftest: No such file or directory
configure:3320: $? = 127
configure:3327: error: in `/var/tmp/portage/dev-python/python-exec-0.3.1/work/python-exec-0.3.1_build':
configure:3329: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.
See `config.log' for more details


e-file "%/sys/cdefs.h" says about glibc.. but I think there is python stuff with this header too..
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danielhilst
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PostPosted: Thu Apr 18, 2013 1:41 pm    Post subject: Reply with quote

Found my problem
Code:
geckos@gentoo-x86 ~ $ sudo equery check -o glibc
!!! /usr/include/sys/vfs.h does not exist
!!! /usr/include/sys/un.h does not exist
!!! /usr/include/sys/ttydefaults.h does not exist
!!! /usr/include/sys/times.h does not exist
!!! /usr/include/sys/select.h does not exist
!!! /usr/include/sys/raw.h does not exist
!!! /usr/include/sys/debugreg.h does not exist
!!! /usr/include/sys/resource.h does not exist
!!! /usr/include/sys/vt.h does not exist
!!! /usr/include/sys/xattr.h does not exist
!!! /usr/include/sys/mman.h does not exist
!!! /usr/include/sys/ucontext.h does not exist
!!! /usr/include/sys/poll.h does not exist
!!! /usr/include/sys/vlimit.h does not exist
!!! /usr/include/sys/procfs.h does not exist
!!! /usr/include/sys/stropts.h does not exist
!!! /usr/include/sys/gmon_out.h does not exist
!!! /usr/include/sys/reboot.h does not exist
!!! /usr/include/sys/socket.h does not exist
!!! /usr/include/sys/socketvar.h does not exist
!!! /usr/include/sys/sem.h does not exist
!!! /etc/locale.gen has incorrect MD5sum
!!! /usr/include/sys/ipc.h does not exist
!!! /usr/include/sys/mtio.h does not exist
!!! /usr/include/sys/klog.h does not exist
!!! /usr/include/sys/uio.h does not exist
!!! /usr/include/sys/time.h does not exist
!!! /usr/include/sys/eventfd.h does not exist
!!! /usr/include/sys/queue.h does not exist
!!! /usr/include/sys/vm86.h does not exist
!!! /usr/include/sys/errno.h does not exist
!!! /usr/include/sys/termios.h does not exist
!!! /usr/include/sys/soundcard.h does not exist
!!! /usr/include/sys/ustat.h does not exist
!!! /usr/include/sys/personality.h does not exist
!!! /usr/include/sys/vtimes.h does not exist
!!! /usr/include/sys/msg.h does not exist
!!! /usr/include/sys/stat.h does not exist
!!! /usr/include/sys/fcntl.h does not exist
!!! /usr/include/sys/param.h does not exist
!!! /usr/include/sys/swap.h does not exist
!!! /usr/include/sys/timex.h does not exist
!!! /usr/include/sys/gmon.h does not exist
!!! /usr/include/sys/timeb.h does not exist
!!! /usr/include/sys/quota.h does not exist
!!! /usr/include/sys/syscall.h does not exist
!!! /usr/include/sys/profil.h does not exist
!!! /usr/include/sys/ttychars.h does not exist
!!! /usr/include/sys/kd.h does not exist
!!! /usr/include/sys/mount.h does not exist
!!! /usr/include/sys/wait.h does not exist
!!! /usr/include/sys/types.h does not exist
!!! /usr/include/sys/prctl.h does not exist
!!! /usr/include/sys/unistd.h does not exist
!!! /usr/include/sys/user.h does not exist
!!! /usr/include/sys/dir.h does not exist
!!! /usr/include/sys/sysinfo.h does not exist
!!! /usr/include/sys/ptrace.h does not exist
!!! /usr/include/sys/ioctl.h does not exist
!!! /usr/include/sys/file.h does not exist
!!! /usr/include/sys/reg.h does not exist
!!! /usr/include/sys/perm.h does not exist
!!! /usr/include/sys/inotify.h does not exist
!!! /usr/include/sys/signal.h does not exist
!!! /usr/include/sys/kdaemon.h does not exist
!!! /usr/include/sys/sendfile.h does not exist
!!! /usr/include/sys/shm.h does not exist
!!! /usr/include/sys/syslog.h does not exist
!!! /usr/include/sys/statvfs.h does not exist
!!! /usr/include/sys/ultrasound.h does not exist
!!! /usr/include/sys/fanotify.h does not exist
!!! /usr/include/sys/statfs.h does not exist
!!! /usr/include/sys/pci.h does not exist
!!! /usr/include/sys/epoll.h does not exist
!!! /usr/include/sys/sysmacros.h does not exist
!!! /usr/include/sys/timerfd.h does not exist
!!! /usr/include/sys/bitypes.h does not exist
!!! /usr/include/sys/fsuid.h does not exist
!!! /usr/include/sys/cdefs.h does not exist
!!! /usr/include/sys/io.h does not exist
!!! /usr/include/sys/sysctl.h does not exist
!!! /usr/include/sys/acct.h does not exist
!!! /usr/include/sys/utsname.h does not exist
!!! /usr/include/sys/signalfd.h does not exist
!!! /usr/include/sys/elf.h does not exist
* Checking sys-libs/glibc-2.15-r3 ...
   1421 out of 1506 files passed


So, boot with livecd and remerge glibc?
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mgorny
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PostPosted: Thu Apr 18, 2013 2:50 pm    Post subject: Reply with quote

Since that's just a single directory, you could just catch glibc .tbz2 and unpack the respective files from it. But then re-emerge glibc to get the package in sync.
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