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ROOT.CERN What does this warning mean?
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aido
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PostPosted: Sun Sep 07, 2014 9:36 pm    Post subject: ROOT.CERN What does this warning mean? Reply with quote

When I'm loading ROOT.CERN 6.00.02, the warning appears in terminal:
Code:

Warning in cling::CIFactory::createCI():
C++ ABI mismatch, compiled with __GLIBCXX__ v20140522 running with v20130411


What can be the reason of this warning and how to fix it?
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xaviermiller
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PostPosted: Mon Sep 08, 2014 6:13 am    Post subject: Reply with quote

Code:
emerge --info please
it seems you have an older version of glibc than the one that was compiled for that software.
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aido
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PostPosted: Mon Sep 08, 2014 8:07 am    Post subject: Reply with quote

emerge --info

Portage 2.2.8-r1 (default/linux/amd64/13.0/desktop, gcc-4.8.3, glibc-2.19-r1, 3.14.14-gentoo x86_64)
=================================================================
System uname: Linux-3.14.14-gentoo-x86_64-Pentium-R-_Dual-Core_CPU_T4300_@_2.10GHz-with-gentoo-2.2
KiB Mem: 2056296 total, 821000 free
KiB Swap: 4194300 total, 4194300 free
Timestamp of tree: Sat, 06 Sep 2014 18:30:01 +0000
ld GNU ld (Gentoo 2.23.2 p1.0) 2.23.2
app-shells/bash: 4.2_p45
dev-lang/python: 2.7.7, 3.3.5-r1
dev-util/cmake: 2.8.12.2-r1
dev-util/pkgconfig: 0.28-r1
sys-apps/baselayout: 2.2
sys-apps/openrc: 0.12.4
sys-apps/sandbox: 2.6-r1
sys-devel/autoconf: 2.13, 2.69
sys-devel/automake: 1.13.4
sys-devel/binutils: 2.23.2
sys-devel/gcc: 4.7.3-r1, 4.8.3
sys-devel/gcc-config: 1.7.3
sys-devel/libtool: 2.4.2-r1
sys-devel/make: 3.82-r4
sys-kernel/linux-headers: 3.13 (virtual/os-headers)
sys-libs/glibc: 2.19-r1
Repositories: gentoo science nginx-overlay qt
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -msse3"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe -msse3"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="ftp://gentoo.bloodhost.ru/ http://gentoo.bloodhost.ru/ ftp://mirror.yandex.ru/gentoo-distfiles/ http://mirror.yandex.ru/gentoo-distfiles/"
LANG="russian"
LC_ALL="ru_RU.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/nginx-overlay /var/lib/layman/qt"
USE="X a52 aac acl acpi alsa amd64 berkdb bindist blas branding bzip2 cairo cdda cli consolekit cracklib crypt cups curl cxx dbus djvu dri dts dvdr emboss encode exif expat fam ffmpeg firefox flac fortran gd gdbm gif git glut gmp gpm gtk iconv icu ios ipod ipv6 jpeg lcms ldap libnotify lzma lzo mad matroska mmx mng modules mp3 mp4 mpeg multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds qt3support qt4 readline sdl session spell sse sse2 sse3 ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics elantech" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="ru en" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
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xaviermiller
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PostPosted: Mon Sep 08, 2014 8:38 am    Post subject: Reply with quote

How did you get ROOT.CERN ? Is it from the ebuild or from a non-Gentoo binary package ?

I guess this is a non-Gentoo package.

It is recommended to use the versions from portage, and there is a bump request for sci-physics/root-6.00.02 in bugzilla, and this is now in the Science Overlay
https://github.com/gentoo-science/sci/tree/master/sci-physics/root
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aido
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PostPosted: Mon Sep 08, 2014 11:47 am    Post subject: Reply with quote

I installed root using gentoo-science overlay.
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xaviermiller
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PostPosted: Mon Sep 08, 2014 11:54 am    Post subject: Reply with quote

It seems you have changed of GCC version between the compilation of root and cling, regarding of this: https://sft.its.cern.ch/jira/browse/ROOT-5961

Re-emerge cling with the new version of GCC, or re-emerge your system.
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aido
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PostPosted: Sat Sep 20, 2014 8:27 am    Post subject: Reply with quote

Thanks you! Now it works.
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