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pirata
n00b
Joined: 13 Sep 2004
Posts: 51
Location: Peru
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 Posted: Sun Jul 06, 2008 7:14 pm Post subject: [solved]emerge gets permission denied? |
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Just to be clear _I am_ running as root.
when I emerge sync I get this
| Code: |
MOTD brought to you by motd-o-matic, version 0.3
receiving file list ... done
rsync: readlink "/usr/portage/dev-perl/CPAN-Checksums" failed: Permission denied (13)
IO error encountered -- skipping file deletion
rsync: recv_generator: mkdir "/usr/portage/dev-perl/CPAN-Checksums" failed: Permission denied (13)
*** Skipping any contents from this failed directory ***
dev-perl/CPAN-Checksums/
rsync: recv_generator: failed to stat "/usr/portage/metadata/cache/dev-java/asm-1.4.3-r3": Permission denied (13)
rsync: recv_generator: failed to stat "/usr/portage/metadata/cache/dev-java/commons-dbutils-1.1": Permission denied (13)
rsync: recv_generator: failed to stat "/usr/portage/metadata/cache/dev-java/fastutil-4.4.2-r1": Permission denied (13)
rsync: recv_generator: failed to stat "/usr/portage/metadata/cache/dev-java/java-getopt-1.0.13": Permission denied (13)
Number of files: 126064
Number of files transferred: 0
Total file size: 160462451 bytes
Total transferred file size: 0 bytes
Literal data: 0 bytes
Matched data: 0 bytes
File list size: 2967571
File list generation time: 25.446 seconds
File list transfer time: 0.000 seconds
Total bytes sent: 171
Total bytes received: 2968005
sent 171 bytes received 2968005 bytes 25261.07 bytes/sec
total size is 160462451 speedup is 54.06
rsync error: some files could not be transferred (code 23) at main.c(1497) [generator=3.0.2]
>>> Exceeded PORTAGE_RSYNC_RETRIES: 3
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and when I try to emerge a package , for example emerge -pvu codeine, I get:
| Code: | galeon_del_pirata pirata # emerge -pvu codeine
These are the packages that would be merged, in order:
Calculating dependencies |!!! A file is not listed in the Manifest: '/usr/portage/dev-perl/libwww-perl/libwww-perl-5.803-r1.ebuild'
-!!! A file is not listed in the Manifest: '/usr/portage/dev-python/simplejson/simplejson-1.7.3.ebuild'
\!!! A file is not listed in the Manifest: '/usr/portage/media-video/vlc/vlc-0.9.0_alpha20080625.ebuild'
\!!! A file is not listed in the Manifest: '/usr/portage/www-client/opera/opera-9.51_pre2059.ebuild'
/!!! A file is not listed in the Manifest: '/usr/portage/net-analyzer/wireshark/wireshark-0.99.8.ebuild'
/!!! A file is not listed in the Manifest: '/usr/portage/media-libs/imlib/imlib-1.9.15-r1.ebuild'
\!!! A file is not listed in the Manifest: '/usr/portage/dev-perl/URI/URI-1.36.ebuild'
|!!! A file is not listed in the Manifest: '/usr/portage/net-www/netscape-flash/netscape-flash-9.0.115.0.ebuild'
... done!
Total: 0 packages, Size of downloads: 0 kB
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Any Ideas?
Last edited by pirata on Wed Jul 09, 2008 2:34 am; edited 1 time in total |
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Akhouk
Guru
Joined: 23 May 2003
Posts: 471
Location: The Two Niles, Africa
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| Posted: Mon Jul 07, 2008 12:50 am Post subject: |
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Do you have portage on NFS or something like that?
What do the file permissions say:
| Code: | | ls -l /usr/portage/metadata/cache/dev-java/asm-1.4.3-r3 |
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AMD 64 3500+, 2Gb RAM DDR400, 2 x 180Gb SATA, 256Mb Nvidia |
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pirata
n00b
Joined: 13 Sep 2004
Posts: 51
Location: Peru
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| Posted: Mon Jul 07, 2008 5:08 pm Post subject: |
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No, I have gentoo installed on an reiserfs partition which is my root and my home dir on another partition, xfs iirc. and my music in an ext3 particion
First time i've ever experienced emerge issues since 2004 when I started using gentoo exclusively (except that time that in my noobness I uninstalled python  )
when I type ls - l /usr/portage/metadata/cache/dev-java/asm-1.4.3-r3
I get | Code: | | ls: cannot access /usr/portage/metadata/cache/dev-java/asm-1.4.3-r3: Permission denied |
do you think it is a fsck error?
Any help would be appreciated. |
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cyrillic
Veteran
Joined: 18 Feb 2003
Posts: 7086
Location: Groton, Massachusetts USA
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| Posted: Mon Jul 07, 2008 6:55 pm Post subject: |
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What is the output of
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pirata
n00b
Joined: 13 Sep 2004
Posts: 51
Location: Peru
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| Posted: Mon Jul 07, 2008 7:13 pm Post subject: |
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| Code: | galeon_del_pirata pirata # df -hT
Filesystem Type Size Used Avail Use% Mounted on
/dev/sda3 reiserfs 29G 22G 6.8G 77% /
udev tmpfs 10M 196K 9.9M 2% /dev
/dev/sda1 ext2 122M 25M 91M 22% /boot
/dev/hda1 ext2 111G 101G 3.9G 97% /home/pirata/Data
/dev/sda5 ext3 160G 69G 83G 46% /home/pirata/Music
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| Code: | galeon_del_pirata pirata # mount
/dev/sda3 on / type reiserfs (rw)
proc on /proc type proc (rw,noexec,nosuid,nodev)
sysfs on /sys type sysfs (rw,noexec,nosuid,nodev)
udev on /dev type tmpfs (rw,nosuid)
devpts on /dev/pts type devpts (rw,noexec,nosuid)
usbfs on /proc/bus/usb type usbfs (rw,noexec,nosuid)
/dev/sda1 on /boot type ext2 (rw)
/dev/hda1 on /home/pirata/Data type ext2 (rw)
/dev/sda5 on /home/pirata/Music type ext3 (rw)
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cyrillic
Veteran
Joined: 18 Feb 2003
Posts: 7086
Location: Groton, Massachusetts USA
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| Posted: Mon Jul 07, 2008 9:27 pm Post subject: |
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| pirata wrote: | | do you think it is a fsck error? |
It could be. Take a look at dmesg to see if the kernel is reporting filesystem errors.
The other things you posted look OK. |
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Akhouk
Guru
Joined: 23 May 2003
Posts: 471
Location: The Two Niles, Africa
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| Posted: Tue Jul 08, 2008 12:28 am Post subject: |
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| cyrillic wrote: | | pirata wrote: | | do you think it is a fsck error? |
It could be. Take a look at dmesg to see if the kernel is reporting filesystem errors.
The other things you posted look OK. |
It sounds like file system corruption. I can't see any other reason while root user is denied access to certain files. Try to fsck the drive.
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AMD 64 3500+, 2Gb RAM DDR400, 2 x 180Gb SATA, 256Mb Nvidia |
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pirata
n00b
Joined: 13 Sep 2004
Posts: 51
Location: Peru
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| Posted: Wed Jul 09, 2008 2:35 am Post subject: |
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| yeah, apparently there were some bad blocks not handled correctly. Thanks for your help. |
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