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Mediawiki database gone after mysql rebuild
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Warhead
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PostPosted: Thu Oct 12, 2006 8:23 am    Post subject: Mediawiki database gone after mysql rebuild Reply with quote

I switched to the latest gcc, so I had to rebuild my packages. Having that done, however, my mediawiki does not exist anymore. This is what my browser states:
Code:

Error in fetchObject(): Table 'wikidb.page' doesn't exist

Backtrace:

    * GlobalFunctions.php line 602 calls wfBacktrace()
    * Database.php line 596 calls wfDebugDieBacktrace()
    * Database.php line 1787 calls Database::fetchObject()
    * LinkBatch.php line 76 calls ResultWrapper::fetchObject()
    * LinkBatch.php line 55 calls LinkBatch::executeInto()
    * Skin.php line 192 calls LinkBatch::execute()
    * Skin.php line 171 calls Skin::preloadExistence()
    * SkinTemplate.php line 108 calls Skin::initPage()
    * MonoBook.php line 28 calls SkinTemplate::initPage()
    * SkinTemplate.php line 151 calls SkinMonoBook::initPage()
    * OutputPage.php line 582 calls SkinTemplate::outputPage()
    * OutputPage.php line 799 calls OutputPage::output()
    * Database.php line 476 calls OutputPage::databaseError()
    * Database.php line 419 calls Database::reportQueryError()
    * Database.php line 806 calls Database::query()
    * Database.php line 825 calls Database::select()
    * JobQueue.php line 47 calls Database::selectRow()
    * Wiki.php line 289 calls Job::pop()
    * Wiki.php line 247 calls MediaWiki::doJobs()
    * index.php line 124 calls MediaWiki::finalCleanup()

How does a rebuild of mysql remove a database? I am puzzled...please enlighten my.

Regards
Warhead
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Janne Pikkarainen
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PostPosted: Thu Oct 12, 2006 9:58 am    Post subject: Reply with quote

Are you sure the database is actually removed? What could have happened is that your old database is still in /var/lib/mysql/ and your new upgraded version uses /var/lib/mysql-500 or so...

Is the database visible via some other method, like command-line mysql client?
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Warhead
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PostPosted: Thu Oct 12, 2006 10:15 am    Post subject: Reply with quote

Hmm...thanks for the advice, I thnik I discoverd something strange. In /var/lib/mysql there is a wikidb directory an anoter mysql directory...
But I do not know, if that causes the error, nor how to fix it

Regards
Warhead
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Janne Pikkarainen
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PostPosted: Thu Oct 12, 2006 10:20 am    Post subject: Reply with quote

Well, can you see the database with command-line MySQL client?

Code:
mysql -u root -p
USE wikidb;
SHOW TABLES;
quit


If not, then you might want to stop MySQL, move your wikidb directory from /var/lib/mysql/mysql/wikidb to /var/lib/mysql/wikidb and restart MySQL. Naturally you have backups made before you try anything like this, though this should be safe.

And check file permissions, too: make sure mysql user has permissions to your database.
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Warhead
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PostPosted: Thu Oct 12, 2006 10:49 am    Post subject: Reply with quote

It seams the database ist still there:
Code:

mysql> SHOW TABLES;
+------------------+
| Tables_in_wikidb |
+------------------+
| archive          |
| blobs            |
| brokenlinks      |
| categorylinks    |
| cur              |
| hitcounter       |
| image            |
| imagelinks       |
| interwiki        |
| ipblocks         |
| links            |
| linkscc          |
| logging          |
| math             |
| objectcache      |
| old              |
| oldimage         |
| querycache       |
| recentchanges    |
| searchindex      |
| site_stats       |
| user             |
| user_newtalk     |
| user_rights      |
| validate         |
| watchlist        |
+------------------+
26 rows in set (0.00 sec)

mysql>


So the MediaWiki uses a wrong path? This is confusing...

Regads
Warhead
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Janne Pikkarainen
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PostPosted: Thu Oct 12, 2006 10:52 am    Post subject: Reply with quote

Another two guesses:

- Your mediawiki config file has been replaced with default one.

- Your PHP has been recompiled without mysql USE flag and now it's completely missing MySQL support, and MediaWiki just decides to throw a very misleading error. Check with emerge -pv dev-lang/php.

- Your mediawiki user account in MySQL is not there anymore and mediawiki doesn't have access to database for that reason.
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Warhead
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PostPosted: Thu Oct 12, 2006 11:21 am    Post subject: Reply with quote

PHP seems to be compiled correctly:
Code:

narzul mysql # emerge -pv dev-lang/php

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   R   ] dev-lang/php-5.1.6-r4  USE="apache2 cgi cli ctype fastbuild force-cgi-redirect ftp gd hash iconv ipv6 memlimit mysql nls pcre pdo pic posix reflection session simplexml soap sockets spl sqlite ssl tokenizer truetype xml xmlreader xmlwriter xsl zlib -adabas -apache -bcmath -berkdb -birdstep -bzip2 -calendar -cdb -cjk -concurrentmodphp -crypt -curl -curlwrappers -db2 -dbase -dbmaker -debug -discard-path -doc -empress -empress-bcs -esoob -exif -fdftk -filepro -firebird -flatfile -frontbase -gd-external -gdbm -gmp -hardenedphp -hyperwave-api -imap -informix -inifile -interbase -iodbc -java-external -kerberos -ldap -libedit -mcve -mhash -ming -msql -mssql -mysqli -ncurses -oci8 -oci8-instant-client -odbc -pcntl -pdo-external -postgres -qdbm -readline -recode -sapdb -sasl -sharedext -sharedmem -snmp -solid -spell -sybase -sybase-ct -sysvipc -threads -tidy -unicode -vm-goto -vm-switch -wddx -xmlrpc -xpm -yaz -zip" 0 kB

Total size of downloads: 0 kB
narzul mysql #


The directory /usr/share/webapps/mediawiki/1.6.8/conf is empty...I configured the Wiki via a webinterface, so I do not have the insight, where the software saves ist configuration. No documentation in /user/share/docs/mediawiki/INSTALL.txt ether.

I guess etc-update killed somthing, but I did not changed any configuration, except /init.d scripts...

Regards
Warhead
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I shall not cease to fiddle while you burn."
To Nero Rome replied: "Pray do your worst,
'Tis my excuse that you were fiddling first."
--Orm Pludge
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cokey
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PostPosted: Thu Oct 12, 2006 11:51 am    Post subject: Reply with quote

try this:
Code:
USE="mysqli" emerge php
try emerging php using the mysqli extention seeing as you are using >php5
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Warhead
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PostPosted: Thu Oct 12, 2006 12:05 pm    Post subject: Reply with quote

No effect in adding 'mysqli' to make.conf:

Code:

USE="aalib acpi adabas adns adsl afs apache2 async bash-completion bzip2 cairo
     caps cgi dba dbase dbx dedicated dio ethereal freetds gd gzip howl imagemagick
     libcaca lm_sensors mime mmx msql mysql [b]mysqli[/b] nis nptl nptlonly offensive openssh
     pdf php postgres quotas samba sockets svg svga syslog tiff usb xml
     xmlreader zip -X -alsa -arts -avi -dri -eds -emboss -gnome -gtk -gtk2
     -ipv6 -kde -mpeg -opengl -oss -pdflib -pppd -qt -qt3 -qt4 -sdl -truetype
     -truetype-fonts -type1-fonts -xml2 -xmms -xorg -xv"

emerge stillt states:
Code:
narzul conf # emerge -pv dev-lang/php

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   R   ] dev-lang/php-5.1.6-r4  USE="apache2 cgi cli ctype fastbuild force-cgi-redirect ftp gd hash iconv ipv6 memlimit mysql nls pcre pdo pic posix reflection session simplexml soap sockets spl sqlite ssl tokenizer truetype xml xmlreader xmlwriter xsl zlib -adabas -apache -bcmath -berkdb -birdstep -bzip2 -calendar -cdb -cjk -concurrentmodphp -crypt -curl -curlwrappers -db2 -dbase -dbmaker -debug -discard-path -doc -empress -empress-bcs -esoob -exif -fdftk -filepro -firebird -flatfile -frontbase -gd-external -gdbm -gmp -hardenedphp -hyperwave-api -imap -informix -inifile -interbase -iodbc -java-external -kerberos -ldap -libedit -mcve -mhash -ming -msql -mssql -mysqli -ncurses -oci8 -oci8-instant-client -odbc -pcntl -pdo-external -postgres -qdbm -readline -recode -sapdb -sasl -sharedext -sharedmem -snmp -solid -spell -sybase -sybase-ct -sysvipc -threads -tidy -unicode -vm-goto -vm-switch -wddx -xmlrpc -xpm -yaz -zip" 0 kB

Total size of downloads: 0 kB
narzul conf #

_________________
To Rome said Nero: "If to smoke you turn
I shall not cease to fiddle while you burn."
To Nero Rome replied: "Pray do your worst,
'Tis my excuse that you were fiddling first."
--Orm Pludge
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flash
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PostPosted: Sun Feb 24, 2008 12:39 am    Post subject: Reply with quote

Hi,

If you changed the mediawiki version. You must update the SQL tables. You go in your mediawiki directory and after you do:

".php maintenance/update.php"

and here you say what you see.
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