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Fitap
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PostPosted: Thu Feb 16, 2023 7:00 pm    Post subject: [Solved] existing preserved libs found. But nothing shows me Reply with quote

Hi guys, I get this message successively, but nothing libs to preserve portage shows me.

What can I do ?

Where is the mess in my gentoo box?

Regards.


Last edited by Fitap on Fri Feb 17, 2023 7:39 pm; edited 1 time in total
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fedeliallalinea
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PostPosted: Thu Feb 16, 2023 7:30 pm    Post subject: Reply with quote

Have you tried run emerge @preserved-rebuild command?
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PostPosted: Thu Feb 16, 2023 7:33 pm    Post subject: Reply with quote

crystal ball gazing showed nothing :lol:
Code:
I get this message

show us the message :roll:

emerge -va --usepkg=n @preserved-rebuild && revdep-rebuild -vp - what's shown after you execute these commands?

8)
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Fitap
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PostPosted: Thu Feb 16, 2023 9:54 pm    Post subject: Reply with quote

fedeliallalinea wrote:
Have you tried run emerge @preserved-rebuild command?


Yes, like usually do but nothing is rebuild.
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Fitap
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PostPosted: Thu Feb 16, 2023 9:59 pm    Post subject: Reply with quote

CooSee wrote:
crystal ball gazing showed nothing :lol:
Code:
I get this message

show us the message :roll:

emerge -va --usepkg=n @preserved-rebuild && revdep-rebuild -vp - what's shown after you execute these commands?

8)



Code:
These are the packages that would be merged, in order:

Calculating dependencies... done!

Total: 0 packages, Size of downloads: 0 KiB

Nothing to merge; quitting.

 * This is the new python coded version
 * Please report any bugs found using it.
 * The original revdep-rebuild script is installed as revdep-rebuild.sh
 * Please file bugs at: https://bugs.gentoo.org/
 * Collecting system binaries and libraries
 * Collecting dynamic linking information
 * Scanning files
 * Checking dynamic linking consistency

Your system is consistent
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CooSee
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PostPosted: Thu Feb 16, 2023 10:11 pm    Post subject: Reply with quote

ok, now i see !

really weird - please wgetpaste your emerge --info -v

with todays --sync, there's a new portage (upgrade).

do you remember when this behaviour appeared?

check with, e.g.
Code:
genlop --list --date 1 days ago

fyi - snippet from https://wiki.gentoo.org/wiki/Gentoolkit#revdep-rebuild
Quote:
Important
It is not necessary to run this tool for general use. The portage FEATURE preserve-libs makes the original purpose obsolete. The primary purpose of this tool is now ABI changes for specific libraries when instructions are provided by developers.

8)
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grknight
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PostPosted: Thu Feb 16, 2023 11:00 pm    Post subject: Reply with quote

Also post the output of portageq list_preserved_libs /

This is the list that portage is looking at.
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Fitap
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PostPosted: Fri Feb 17, 2023 12:43 am    Post subject: Reply with quote

CooSee wrote:
ok, now i see !

really weird - please wgetpaste your emerge --info -v

with todays --sync, there's a new portage (upgrade).

do you remember when this behaviour appeared?

check with, e.g.
Code:
genlop --list --date 1 days ago

fyi - snippet from https://wiki.gentoo.org/wiki/Gentoolkit#revdep-rebuild
Quote:
Important
It is not necessary to run this tool for general use. The portage FEATURE preserve-libs makes the original purpose obsolete. The primary purpose of this tool is now ABI changes for specific libraries when instructions are provided by developers.

8)


I have seen this behavior before several times and on the different box I have, but I didn't think anything of it.

emerge --info -v

grknight wrote:
Also post the output of portageq list_preserved_libs /

This is the list that portage is looking at.


Code:
app-arch/bzip2-1.0.8-r4 /usr/lib/libbz2.so.1.0.8 /usr/lib/libbz2.so.1
dev-libs/glib-2.74.4 /usr/lib/libglib-2.0.so.0.7200.2 /usr/lib/libglib-2.0.so.0
dev-libs/libpcre-8.45-r1 /usr/lib/libpcre.so.1.2.13 /usr/lib/libpcre.so.1
media-gfx/graphite2-1.3.14_p20210810-r2 /usr/lib/libgraphite2.so.3.2.1 /usr/lib/libgraphite2.so.3
media-libs/freetype-2.12.1-r1 /usr/lib/libfreetype.so.6.18.2 /usr/lib/libfreetype.so.6
media-libs/harfbuzz-6.0.0 /usr/lib/libharfbuzz.so.0.40401.0 /usr/lib/libharfbuzz.so.0
media-libs/libpng-1.6.39 /usr/lib/libpng16.so.16.37.0 /usr/lib/libpng16.so.16
sys-libs/zlib-1.2.13-r1 /usr/lib/libz.so.1.2.12 /usr/lib/libz.so.1


Edit: I was sitting on the wrong box.
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grknight
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PostPosted: Fri Feb 17, 2023 1:16 am    Post subject: Reply with quote

Fitap wrote:
Code:
app-arch/bzip2-1.0.8-r4 /usr/lib/libbz2.so.1.0.8 /usr/lib/libbz2.so.1
dev-libs/glib-2.74.4 /usr/lib/libglib-2.0.so.0.7200.2 /usr/lib/libglib-2.0.so.0
dev-libs/libpcre-8.45-r1 /usr/lib/libpcre.so.1.2.13 /usr/lib/libpcre.so.1
media-gfx/graphite2-1.3.14_p20210810-r2 /usr/lib/libgraphite2.so.3.2.1 /usr/lib/libgraphite2.so.3
media-libs/freetype-2.12.1-r1 /usr/lib/libfreetype.so.6.18.2 /usr/lib/libfreetype.so.6
media-libs/harfbuzz-6.0.0 /usr/lib/libharfbuzz.so.0.40401.0 /usr/lib/libharfbuzz.so.0
media-libs/libpng-1.6.39 /usr/lib/libpng16.so.16.37.0 /usr/lib/libpng16.so.16
sys-libs/zlib-1.2.13-r1 /usr/lib/libz.so.1.2.12 /usr/lib/libz.so.1


Well that is interesting. They are all 32-bit libs. I wonder if some non-tree binary is holding them.

Edit: they could all be interdependent on each other too. Is 32-bit still enabled on these packages?
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Fitap
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PostPosted: Fri Feb 17, 2023 2:08 am    Post subject: Reply with quote

None is 32 bit enable

Code:
equery u $(portageq list_preserved_libs / | awk '{print $1}')

[ Legend : U - final flag setting for installation]
[        : I - package is installed with flag     ]
[ Colors : set, unset                             ]
 * Found these USE flags for app-arch/bzip2-1.0.8-r4:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 - - static      : !!do not set this during bootstrap!! Causes binaries to be statically linked instead of dynamically
 - - static-libs : Build static versions of dynamic libraries as well
 - - verify-sig  : Verify upstream signatures on distfiles

 * Found these USE flags for dev-libs/glib-2.74.4:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 + + dbus        : Enable dependencies required by glib libraries using dbus service to manage settings saving
 - - debug       : Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see
                   https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
 + + elf         : Enable support for listing and extracting from ELF resource files with gresource tool
 - - gtk-doc     : Build and install gtk-doc based developer documentation for dev-util/devhelp, IDE and offline use
 - - static-libs : Build static versions of dynamic libraries as well
 - - sysprof     : Enable profiling data capture support using dev-util/sysprof-capture
 - - systemtap   : Build support for profiling and tracing using dev-util/systemtap
 - - test        : Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be
                   toggled independently)
 - - utils       : Install gtester-report utility to generate test report files for your software; build gresource utility with ELF
                   support.
 + + xattr       : Add support for extended attributes (filesystem-stored metadata)

 * Found these USE flags for dev-libs/libpcre-8.45-r1:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 + + bzip2       : Add support for pcregrep command to search within bzip2-compressed files (via app-arch/bzip2).
 + + cxx         : Build support for C++ (bindings, extra libraries, code generation, ...)
 + + jit         : Enable just-in-time compilation for improved performance. May prevent use of some PaX memory protection features
                   in Gentoo Hardened.
 - - libedit     : Use the libedit library (replacement for readline)
 - - pcre16      : Build PCRE library for 16 bit characters (e.g. UTF-16).
 - - pcre32      : Build PCRE library for 32 bit characters (e.g. UTF-32).
 + + readline    : Add support for command line editing to pcretest, through sys-libs/readline.
 - - static-libs : Build static versions of dynamic libraries as well
 + + zlib        : Add support for pcregrep command to search within gzip-compressed files (via sys-libs/zlib).

 * Found these USE flags for media-gfx/graphite2-1.3.14_p20210810-r2:
 U I
 - - abi_x86_32 : 32-bit (x86) libraries
 + + perl       : Add optional support/bindings for the Perl language
 - - test       : Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be
                  toggled independently)

 * Found these USE flags for media-libs/freetype-2.12.1-r1:
 U I
 + + X                 : Add support for X11
 - - abi_x86_32        : 32-bit (x86) libraries
 + + adobe-cff         : Use Adobe CFF as default font-renderer
 - - brotli            : Enable brotli decompression support via app-arch/brotli
 + + bzip2             : Support bzip2 compressed PCF fonts.
 + + cleartype-hinting : Bytecode hinting mode for TrueType fonts that activates subpixel hinting (a.k.a. ClearType hinting) by
                         default
 - - debug             : Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see
                         https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
 - - doc               : Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
 - - fontforge         : Install internal headers required for TrueType debugger in media-gfx/fontforge (built with
                         USE=truetype-debugger)
 + + harfbuzz          : Use media-libs/harfbuzz for auto-hinting OpenType fonts. WARNING: may trigger circular dependencies!
 + + png               : Add support for libpng (PNG images)
 - - static-libs       : Build static versions of dynamic libraries as well
 + + svg               : Add support for SVG (Scalable Vector Graphics)
 - - utils             : Install utilities and examples from ft2demos

 * Found these USE flags for media-libs/harfbuzz-6.0.0:
 U I
 - - abi_x86_32    : 32-bit (x86) libraries
 + + cairo         : Enable support for the cairo graphics library
 - - debug         : Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see
                     https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
 - - doc           : Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
 - - experimental  : Enable experimental APIs
 + + glib          : Enable dev-libs/glib unicode functions
 + + graphite      : Enable media-gfx/graphite2 complementary shaper
 + + icu           : Enable ICU (Internationalization Components for Unicode) support, using dev-libs/icu
 + + introspection : Add support for GObject based introspection
 - - test          : Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be
                     toggled independently)
 + + truetype      : Add support for FreeType and/or FreeType2 fonts

 * Found these USE flags for media-libs/libpng-1.6.39:
 U I
 - - abi_x86_32        : 32-bit (x86) libraries
 - - apng              : support unofficial APNG (Animated PNG) spec
 + + cpu_flags_x86_sse : Use the SSE instruction set
 - - static-libs       : Build static versions of dynamic libraries as well

 * Found these USE flags for sys-libs/zlib-1.2.13-r1:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 + + minizip     : include the minizip library for quick and dirty zip extraction
 - - static-libs : Build static versions of dynamic libraries as well
 - - verify-sig  : Verify upstream signatures on distfiles
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grknight
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PostPosted: Fri Feb 17, 2023 2:17 am    Post subject: Reply with quote

Another thought.. what is the output of ls -ld /lib /lib64 /usr/lib /usr/lib64 as well as file /usr/lib/libz.so.1.2.12
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Fitap
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PostPosted: Fri Feb 17, 2023 2:59 am    Post subject: Reply with quote

Code:
ls -ld /lib /lib64 /usr/lib /usr/lib64
drwxr-xr-x  12 root root   4096 ene 25 20:53 /lib/
drwxr-xr-x   6 root root  12288 feb 13 22:06 /lib64/
drwxr-xr-x  31 root root  49152 ene 26 21:51 /usr/lib/
drwxr-xr-x 120 root root 151552 feb 15 21:40 /usr/lib64/


Code:
file /usr/lib/libz.so.1.2.12
/usr/lib/libz.so.1.2.12: ELF 32-bit LSB shared object, Intel 80386, version 1 (SYSV), dynamically linked, stripped
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misterjack
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PostPosted: Fri Mar 29, 2024 12:41 pm    Post subject: Reply with quote

mmh, I have the same problem:

The last days I enabled Gentoo binhost, disabled abi_x86_32 (my steam who needed this is installed now by flatpack) and did 23.0 profile transition. Yesterday was the big emerge -e world. Now I'm stuck at this problem:

Code:
rotarran ~ # portageq list_preserved_libs /
app-arch/bzip2-1.0.8-r5 /usr/lib/libbz2.so.1.0.8 /usr/lib/libbz2.so.1
dev-libs/glib-2.78.3 /usr/lib/libglib-2.0.so.0.7800.4 /usr/lib/libglib-2.0.so.0
dev-libs/libpcre2-10.42-r2 /usr/lib/libpcre2-8.so.0.12.0 /usr/lib/libpcre2-8.so.0
media-gfx/graphite2-1.3.14_p20210810-r3 /usr/lib/libgraphite2.so.3.2.1 /usr/lib/libgraphite2.so.3
media-libs/freetype-2.13.2 /usr/lib/libfreetype.so.6.20.1 /usr/lib/libfreetype.so.6
media-libs/harfbuzz-8.3.0 /usr/lib/libharfbuzz.so.0.60831.0 /usr/lib/libharfbuzz.so.0
media-libs/libpng-1.6.43 /usr/lib/libpng16.so.16.43.0 /usr/lib/libpng16.so.16
sys-libs/zlib-1.3-r4 /usr/lib/libz.so.1.3.1 /usr/lib/libz.so.1

Code:
rotarran ~ # equery u $(portageq list_preserved_libs / | awk '{print $1}')
[ Legend : U - final flag setting for installation]
[        : I - package is installed with flag     ]
[ Colors : set, unset                             ]
 * Found these USE flags for app-arch/bzip2-1.0.8-r5:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 - - static      : !!do not set this during bootstrap!! Causes binaries to be statically linked instead of dynamically
 - - static-libs : Build static versions of dynamic libraries as well
 - - verify-sig  : Verify upstream signatures on distfiles

 * Found these USE flags for dev-libs/glib-2.78.3:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 + + dbus        : Enable dependencies required by glib libraries using dbus service to manage settings saving
 - - debug       : Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
 + + elf         : Enable support for listing and extracting from ELF resource files with gresource tool
 - - gtk-doc     : Build and install gtk-doc based developer documentation for dev-util/devhelp, IDE and offline use
 - - static-libs : Build static versions of dynamic libraries as well
 - - sysprof     : Enable profiling data capture support using dev-util/sysprof-capture
 - - systemtap   : Build support for profiling and tracing using dev-debug/systemtap
 - - test        : Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
 - - utils       : Install gtester-report utility to generate test report files for your software; build gresource utility with ELF support.
 + + xattr       : Add support for extended attributes (filesystem-stored metadata)

 * Found these USE flags for dev-libs/libpcre2-10.42-r2:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 + + bzip2       : Add support for pcregrep command to search within bzip2-compressed files (via app-arch/bzip2).
 + + jit         : Enable just-in-time compilation for improved performance. May prevent use of some PaX memory protection features in Gentoo Hardened.
 - - libedit     : Use the libedit library (replacement for readline)
 + + pcre16      : Build PCRE library for 16 bit characters (e.g. UTF-16).
 + + pcre32      : Build PCRE library for 32 bit characters (e.g. UTF-32).
 + + readline    : Add support for command line editing to pcretest, through sys-libs/readline.
 - - static-libs : Build static versions of dynamic libraries as well
 + + unicode     : Add support for Unicode
 - - valgrind    : Enable annotations for accuracy. May slow down runtime slightly. Safe to use even if not currently using dev-debug/valgrind
 - - verify-sig  : Verify upstream signatures on distfiles
 + + zlib        : Add support for pcregrep command to search within gzip-compressed files (via sys-libs/zlib).

 * Found these USE flags for media-gfx/graphite2-1.3.14_p20210810-r3:
 U I
 - - abi_x86_32 : 32-bit (x86) libraries
 - - perl       : Add optional support/bindings for the Perl language
 - - test       : Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

 * Found these USE flags for media-libs/freetype-2.13.2:
 U I
 + + X                 : Add support for X11
 - - abi_x86_32        : 32-bit (x86) libraries
 + + adobe-cff         : Use Adobe CFF as default font-renderer
 - - brotli            : Enable Brotli compression support
 + + bzip2             : Support bzip2 compressed PCF fonts.
 + + cleartype-hinting : Bytecode hinting mode for TrueType fonts that activates subpixel hinting (a.k.a. ClearType hinting) by default
 - - debug             : Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
 - - doc               : Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
 - - fontforge         : Install internal headers required for TrueType debugger in media-gfx/fontforge (built with USE=truetype-debugger)
 + - harfbuzz          : Use media-libs/harfbuzz for auto-hinting OpenType fonts. WARNING: may trigger circular dependencies!
 + + png               : Add support for libpng (PNG images)
 - - static-libs       : Build static versions of dynamic libraries as well
 + + svg               : Add support for SVG (Scalable Vector Graphics)
 - - utils             : Install utilities and examples from ft2demos

 * Found these USE flags for media-libs/harfbuzz-8.3.0:
 U I
 - - abi_x86_32    : 32-bit (x86) libraries
 + + cairo         : Enable support for the cairo graphics library
 - - debug         : Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
 - - doc           : Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
 - - experimental  : Enable experimental APIs
 + + glib          : Enable dev-libs/glib unicode functions
 + + graphite      : Enable media-gfx/graphite2 complementary shaper
 + + icu           : Enable ICU (Internationalization Components for Unicode) support, using dev-libs/icu
 + + introspection : Add support for GObject based introspection
 - - test          : Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
 + + truetype      : Add support for FreeType and/or FreeType2 fonts

 * Found these USE flags for media-libs/libpng-1.6.43:
 U I
 - - abi_x86_32        : 32-bit (x86) libraries
 - - apng              : support unofficial APNG (Animated PNG) spec
 + + cpu_flags_x86_sse : Use the SSE instruction set
 - - static-libs       : Build static versions of dynamic libraries as well
 - - test              : Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

 * Found these USE flags for sys-libs/zlib-1.3-r4:
 U I
 - - abi_x86_32  : 32-bit (x86) libraries
 + + minizip     : include the minizip library for quick and dirty zip extraction
 - - static-libs : Build static versions of dynamic libraries as well
 - - verify-sig  : Verify upstream signatures on distfiles


Code:
rotarran ~ # file /usr/lib/libz.so.1.3.1
/usr/lib/libz.so.1.3.1: ELF 32-bit LSB shared object, Intel 80386, version 1 (SYSV), dynamically linked, stripped

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