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Fitap
Guru
Joined: 13 Mar 2011
Posts: 444
Location: Rosario, Argentina
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 Posted: Sun Jul 26, 2020 10:21 pm Post subject: [Solved] dev-db/mysql-8.0.20-r1 NOT merged due to file conf. |
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Hi, I was updating the system and I got this error with dev-db/mysql-8.0.20-r1 not merged due to file collisions.
Service wgetpaste and firefox send doesn't work.
Here is a part of the build.log
| Code: | * Detected file collision(s):
*
* /usr/bin/mysqldumpslow
* /usr/bin/mysql_tzinfo_to_sql
* /usr/bin/mysqladmin
* /usr/bin/mysqlimport
* /usr/bin/myisam_ftdump
* /usr/bin/mysqlpump
* /usr/bin/myisampack
* /usr/bin/ibd2sdi
* /usr/bin/mysqldump
* /usr/bin/mysql_client_test
* /usr/bin/mysqlbinlog
* /usr/bin/myisamlog
* /usr/bin/myisamchk
* /usr/bin/mysqltest_safe_process
* /usr/bin/mysql_config_editor
* /usr/bin/comp_err
* /usr/bin/mysql_ssl_rsa_setup
* /usr/bin/mysql_upgrade
* /usr/bin/mysql
* /usr/bin/innochecksum
* /usr/bin/mysqld_multi
* /usr/bin/mysqlshow
* /usr/bin/mysqlslap
* /usr/bin/mysqlxtest
* /usr/bin/mysql_secure_installation
* /usr/bin/mysqlcheck
* /usr/bin/mysqltest
* /usr/bin/mysqld_safe
* /usr/include/mysql/mysqlx_version.h
* /usr/include/mysql/mysqlx_ername.h
* /usr/include/mysql/mysqlx_error.h
* /usr/sbin/mysqld
* /usr/share/man/man8/mysqld.8.bz2
* /usr/share/man/man1/mysqlpump.1.bz2
* /usr/share/man/man1/mysqldumpslow.1.bz2
* /usr/share/man/man1/mysqladmin.1.bz2
* /usr/share/man/man1/myisam_ftdump.1.bz2
* /usr/share/man/man1/mysql_config_editor.1.bz2
* /usr/share/man/man1/mysqlshow.1.bz2
* /usr/share/man/man1/mysqlslap.1.bz2
* /usr/share/man/man1/comp_err.1.bz2
* /usr/share/man/man1/myisamchk.1.bz2
* /usr/share/man/man1/myisamlog.1.bz2
* /usr/share/man/man1/mysqlman.1.bz2
* /usr/share/man/man1/mysql.1.bz2
* /usr/share/man/man1/mysql_secure_installation.1.bz2
* /usr/share/man/man1/mysql.server.1.bz2
* /usr/share/man/man1/ibd2sdi.1.bz2
* /usr/share/man/man1/mysql_config.1.bz2
* /usr/share/man/man1/mysqlcheck.1.bz2
* /usr/share/man/man1/mysqld_safe.1.bz2
* /usr/share/man/man1/mysqld_multi.1.bz2
* /usr/share/man/man1/mysql_ssl_rsa_setup.1.bz2
* /usr/share/man/man1/mysql_upgrade.1.bz2
* /usr/share/man/man1/mysqldump.1.bz2
* /usr/share/man/man1/myisampack.1.bz2
* /usr/share/man/man1/mysql_tzinfo_to_sql.1.bz2
* /usr/share/man/man1/lz4_decompress.1.bz2
* /usr/share/man/man1/mysqlbinlog.1.bz2
* /usr/share/man/man1/innochecksum.1.bz2
* /usr/share/man/man1/mysqlimport.1.bz2
* /usr/share/mysql/messages_to_clients.txt
* /usr/share/mysql/mysql-log-rotate
* /usr/share/mysql/mysqld_multi.server
* /usr/share/mysql/uninstall_rewriter.sql
* /usr/share/mysql/install_rewriter.sql
* /usr/share/mysql/mysql.server
* /usr/share/mysql/dictionary.txt
* /usr/share/mysql/messages_to_error_log.txt
* /usr/share/mysql/innodb_memcached_config.sql
* /usr/share/mysql/norwegian/errmsg.sys
* /usr/share/mysql/italian/errmsg.sys
* /usr/share/mysql/japanese/errmsg.sys
* /usr/share/mysql/swedish/errmsg.sys
* /usr/share/mysql/portuguese/errmsg.sys
* /usr/share/mysql/estonian/errmsg.sys
* /usr/share/mysql/hungarian/errmsg.sys
* /usr/share/mysql/russian/errmsg.sys
* /usr/share/mysql/polish/errmsg.sys
* /usr/share/mysql/serbian/errmsg.sys
* /usr/share/mysql/greek/errmsg.sys
* /usr/share/mysql/ukrainian/errmsg.sys
* /usr/share/mysql/charsets/cp1250.xml
* /usr/share/mysql/charsets/cp1251.xml
* /usr/share/mysql/charsets/latin2.xml
* /usr/share/mysql/charsets/koi8u.xml
* /usr/share/mysql/charsets/cp850.xml
* /usr/share/mysql/charsets/latin7.xml
* /usr/share/mysql/charsets/ascii.xml
* /usr/share/mysql/charsets/cp852.xml
* /usr/share/mysql/charsets/latin1.xml
* /usr/share/mysql/charsets/hebrew.xml
* /usr/share/mysql/charsets/Index.xml
* /usr/share/mysql/charsets/armscii8.xml
* /usr/share/mysql/charsets/macce.xml
* /usr/share/mysql/charsets/latin5.xml
* /usr/share/mysql/charsets/koi8r.xml
* /usr/share/mysql/charsets/README
* /usr/share/mysql/charsets/keybcs2.xml
* /usr/share/mysql/charsets/cp866.xml
* /usr/share/mysql/charsets/dec8.xml
* /usr/share/mysql/charsets/macroman.xml
* /usr/share/mysql/charsets/swe7.xml
* /usr/share/mysql/charsets/greek.xml
* /usr/share/mysql/charsets/cp1257.xml
* /usr/share/mysql/charsets/hp8.xml
* /usr/share/mysql/charsets/cp1256.xml
* /usr/share/mysql/charsets/geostd8.xml
* /usr/share/mysql/dutch/errmsg.sys
* /usr/share/mysql/czech/errmsg.sys
* /usr/share/mysql/spanish/errmsg.sys
* /usr/share/mysql/korean/errmsg.sys
* /usr/share/mysql/bulgarian/errmsg.sys
* /usr/share/mysql/slovak/errmsg.sys
* /usr/share/mysql/french/errmsg.sys
* /usr/share/mysql/danish/errmsg.sys
* /usr/share/mysql/german/errmsg.sys
* /usr/share/mysql/norwegian-ny/errmsg.sys
* /usr/share/mysql/english/errmsg.sys
* /usr/share/mysql/romanian/errmsg.sys
* /usr/lib64/libmysqlservices.a
* /usr/lib64/mysql/plugin/component_udf_unreg_real_func.so
* /usr/lib64/mysql/plugin/component_log_sink_syseventlog.so
* /usr/lib64/mysql/plugin/libtest_sql_cmds_1.so
* /usr/lib64/mysql/plugin/libtest_sql_sqlmode.so
* /usr/lib64/mysql/plugin/connection_control.so
* /usr/lib64/mysql/plugin/component_pfs_example_component_population.so
* /usr/lib64/mysql/plugin/component_test_pfs_resource_group.so
* /usr/lib64/mysql/plugin/libtest_services_threaded.so
* /usr/lib64/mysql/plugin/udf_example.so
* /usr/lib64/mysql/plugin/component_test_status_var_service_str.so
* /usr/lib64/mysql/plugin/component_test_status_var_service_unreg_only.so
* /usr/lib64/mysql/plugin/component_udf_reg_3_func.so
* /usr/lib64/mysql/plugin/libtest_session_detach.so
* /usr/lib64/mysql/plugin/libtest_session_in_thd.so
* /usr/lib64/mysql/plugin/component_test_status_var_service_int.so
* /usr/lib64/mysql/plugin/component_test_mysql_runtime_error.so
* /usr/lib64/mysql/plugin/mysql_clone.so
* /usr/lib64/mysql/plugin/libtest_sql_stmt.so
* /usr/lib64/mysql/plugin/component_test_string_service.so
* /usr/lib64/mysql/plugin/component_udf_reg_real_func.so
* /usr/lib64/mysql/plugin/component_test_sys_var_service.so
* /usr/lib64/mysql/plugin/component_validate_password.so
* /usr/lib64/mysql/plugin/component_udf_reg_avg_func.so
* /usr/lib64/mysql/plugin/qa_auth_interface.so
* /usr/lib64/mysql/plugin/component_test_udf_registration.so
* /usr/lib64/mysql/plugin/libtest_sql_errors.so
* /usr/lib64/mysql/plugin/libtest_framework.so
* /usr/lib64/mysql/plugin/component_test_sys_var_service_same.so
* /usr/lib64/mysql/plugin/component_test_string_service_long.so
* /usr/lib64/mysql/plugin/libtest_session_attach.so
* /usr/lib64/mysql/plugin/component_test_udf_services.so
* /usr/lib64/mysql/plugin/component_mysqlbackup.so
* /usr/lib64/mysql/plugin/rewriter.so
* /usr/lib64/mysql/plugin/component_udf_unreg_3_func.so
* /usr/lib64/mysql/plugin/component_test_status_var_service.so
* /usr/lib64/mysql/plugin/pfs_example_plugin_employee.so
* /usr/lib64/mysql/plugin/libtest_sql_views_triggers.so
* /usr/lib64/mysql/plugin/libtest_sql_complex.so
* /usr/lib64/mysql/plugin/validate_password.so
* /usr/lib64/mysql/plugin/component_test_sys_var_service_int.so
* /usr/lib64/mysql/plugin/component_example_component2.so
* /usr/lib64/mysql/plugin/libtest_sql_replication.so
* /usr/lib64/mysql/plugin/auth_socket.so
* /usr/lib64/mysql/plugin/component_test_host_application_signal.so
* /usr/lib64/mysql/plugin/keyring_file.so
* /usr/lib64/mysql/plugin/locking_service.so
* /usr/lib64/mysql/plugin/component_test_system_variable_source.so
* /usr/lib64/mysql/plugin/libtest_sql_lock.so
* /usr/lib64/mysql/plugin/libdaemon_example.so
* /usr/lib64/mysql/plugin/component_test_string_service_charset.so
* /usr/lib64/mysql/plugin/libtest_sql_2_sessions.so
* /usr/lib64/mysql/plugin/component_test_backup_lock_service.so
* /usr/lib64/mysql/plugin/component_log_sink_test.so
* /usr/lib64/mysql/plugin/component_udf_unreg_int_func.so
* /usr/lib64/mysql/plugin/keyring_udf.so
* /usr/lib64/mysql/plugin/mypluglib.so
* /usr/lib64/mysql/plugin/component_udf_reg_only_3_func.so
* /usr/lib64/mysql/plugin/libtest_x_sessions_init.so
* /usr/lib64/mysql/plugin/ha_mock.so
* /usr/lib64/mysql/plugin/libtest_sql_all_col_types.so
* /usr/lib64/mysql/plugin/ddl_rewriter.so
* /usr/lib64/mysql/plugin/daemon_example.ini
* /usr/lib64/mysql/plugin/test_udf_services.so
* /usr/lib64/mysql/plugin/qa_auth_server.so
* /usr/lib64/mysql/plugin/component_test_status_var_service_reg_only.so
* /usr/lib64/mysql/plugin/component_udf_reg_int_same_func.so
* /usr/lib64/mysql/plugin/mysql_no_login.so
* /usr/lib64/mysql/plugin/component_test_pfs_notification.so
* /usr/lib64/mysql/plugin/component_log_filter_dragnet.so
* /usr/lib64/mysql/plugin/component_audit_api_message_emit.so
* /usr/lib64/mysql/plugin/libtest_session_info.so
* /usr/lib64/mysql/plugin/libtest_sql_commit.so
* /usr/lib64/mysql/plugin/libtest_x_sessions_deinit.so
* /usr/lib64/mysql/plugin/semisync_master.so
* /usr/lib64/mysql/plugin/libtest_sql_processlist.so
* /usr/lib64/mysql/plugin/component_test_mysql_current_thread_reader.so
* /usr/lib64/mysql/plugin/component_test_sys_var_service_str.so
* /usr/lib64/mysql/plugin/component_pfs_example.so
* /usr/lib64/mysql/plugin/component_udf_reg_int_func.so
* /usr/lib64/mysql/plugin/component_test_audit_api_message.so
* /usr/lib64/mysql/plugin/test_services_plugin_registry.so
* /usr/lib64/mysql/plugin/component_log_sink_json.so
* /usr/lib64/mysql/plugin/libtest_sql_reset_connection.so
* /usr/lib64/mysql/plugin/replication_observers_example_plugin.so
* /usr/lib64/mysql/plugin/version_token.so
* /usr/lib64/mysql/plugin/libtest_services.so
* /usr/lib64/mysql/plugin/test_services_host_application_signal.so
* /usr/lib64/mysql/plugin/group_replication.so
* /usr/lib64/mysql/plugin/semisync_slave.so
* /usr/lib64/mysql/plugin/auth.so
* /usr/lib64/mysql/plugin/component_example_component1.so
* /usr/lib64/mysql/plugin/libtest_sql_stored_procedures_functions.so
* /usr/lib64/mysql/plugin/adt_null.so
* /usr/lib64/mysql/plugin/libtest_sql_shutdown.so
* /usr/lib64/mysql/plugin/qa_auth_client.so
* /usr/lib64/mysql/plugin/component_example_component3.so
* /usr/lib64/mysql/plugin/component_mysqlx_global_reset.so
* /usr/lib64/mysql/plugin/auth_test_plugin.so
* /usr/lib64/mysql/plugin/test_security_context.so
* /usr/lib64/mysql/plugin/rewrite_example.so
* /usr/lib64/mysql/plugin/ha_example.so
* /usr/bin/mysqlrepair
* /usr/bin/mysqloptimize
* /usr/bin/mysqlanalyze
*
* Searching all installed packages for file collisions...
*
* Press Ctrl-C to Stop
*
* dev-db/mysql-8.0.20:0::gentoo
* /usr/bin/comp_err
* /usr/bin/ibd2sdi
* /usr/bin/innochecksum
* /usr/bin/myisam_ftdump
* /usr/bin/myisamchk
* /usr/bin/myisamlog
* /usr/bin/myisampack
* /usr/bin/mysql
* /usr/bin/mysql_client_test
* /usr/bin/mysql_config_editor
* /usr/bin/mysql_ssl_rsa_setup
* /usr/bin/mysql_tzinfo_to_sql
* /usr/bin/mysql_upgrade
* /usr/bin/mysqladmin
* /usr/bin/mysqlbinlog
* /usr/bin/mysqldump
* /usr/bin/mysqldumpslow
* /usr/bin/mysqlimport
* /usr/bin/mysqlpump
* /usr/bin/mysqltest_safe_process
*
* Package 'dev-db/mysql-8.0.20-r1' NOT merged due to file collisions. If
* necessary, refer to your elog messages for the whole content of the
* above message.
gentoo-NB /var/tmp/portage/dev-db/mysql-8.0. |
What would be happening?
Last edited by Fitap on Mon Jul 27, 2020 2:22 am; edited 1 time in total |
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jhon987
Guru
Joined: 18 Nov 2013
Posts: 301
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| Posted: Sun Jul 26, 2020 10:28 pm Post subject: |
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I have the same issue, it seems the package is being emerged as new instead of update therefore it's no wonder it doesn't run over the collision files.
What I don't understand is why it's marked as new?
and if it's supposed to be like that then, what should be done in order to emerge the new one, erase the old, without losing anything valuable..?
| Code: | # eix sql
[?] dev-db/mysql
Available versions: 5.6.44-r1(0/18)^t 5.6.45-r2(0/18)^t 5.7.26-r1(0/18)^t 5.7.27-r1(0/18)^t ~5.7.29(0/18)^t ~8.0.19-r1^t {cjk client-libs cracklib debug experimental jemalloc latin1 libressl numa +perl profiling router selinux +server static static-libs systemtap tcmalloc test yassl ABI_MIPS="n32 n64 o32" ABI_RISCV="lp64 lp64d" ABI_S390="32 64" ABI_X86="32 64 x32" KERNEL="linux"}
Installed versions: 8.0.20^t(12:19:48 PM 05/22/2020)(perl server -cjk -cracklib -debug -jemalloc -latin1 -libressl -numa -profiling -router -selinux -tcmalloc -test KERNEL="linux")
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| Code: | # equery y dev-db/mysql
Keywords for dev-db/mysql:
| | u |
| a a p s a r | n |
| m r h i p p m s l i m | e u s | r
| d a m p a p c a x 6 3 p s i | a s l | e
| 6 r 6 p 6 p 6 r 8 8 9 h c p | p e o | p
| 4 m 4 a 4 c 4 c 6 k 0 a v s | i d t | o
----------+-----------------------------+------------+-------
5.7.27-r2 | + + + ~ ~ + + ~ + o ~ o o ~ | 6 o 5.7/18 | gentoo
5.7.29-r1 | + + ~ ~ ~ ~ + ~ + o ~ o o ~ | 6 o | gentoo
5.7.30-r1 | + + + ~ ~ ~ ~ ~ + o ~ o o ~ | 6 o | gentoo
5.7.31 | ~ ~ ~ ~ ~ ~ ~ ~ ~ o ~ o o ~ | 7 o | gentoo
----------+-----------------------------+------------+-------
8.0.19-r2 | + + ~ ~ ~ ~ + ~ + o ~ o o ~ | 7 o 8.0 | gentoo
8.0.20-r1 | + + + ~ ~ ~ ~ ~ + o ~ o o ~ | 7 o | gentoo
8.0.21 | ~ ~ ~ ~ ~ ~ ~ ~ ~ o ~ o o ~ | 7 o | gentoo
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Fitap
Guru
Joined: 13 Mar 2011
Posts: 444
Location: Rosario, Argentina
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| Posted: Sun Jul 26, 2020 11:14 pm Post subject: |
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Thanks for response jhon987.
I have notice that is a new install instead upgrade one.
| Code: | [ebuild NS ] dev-db/mysql-8.0.20-r1:8.0::gentoo [8.0.20:0::gentoo] USE="libressl perl server -cjk -cracklib -debug -jemalloc -latin1 -numa -profiling -router (-selinux) -tcmalloc -test" 0 KiB
Total: 1 package (1 in new slot), Size of downloads: 0 KiB
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| Code: | [U?] dev-db/mysql
Available versions:
(5.7) 5.7.27-r2(5.7/18)^t 5.7.29-r1(5.7/18)^t 5.7.30-r1(5.7/18)^t
(8.0) 8.0.19-r2^t 8.0.20-r1^t
{cjk client-libs cracklib debug experimental jemalloc latin1 libressl numa +perl profiling router selinux +server static static-libs systemtap tcmalloc test yassl ABI_MIPS="n32 n64 o32" ABI_RISCV="lp64 lp64d" ABI_S390="32 64" ABI_X86="32 64 x32" KERNEL="linux"}
Installed versions: 8.0.20^t(09:00:28 30/06/20)(libressl perl server -cjk -cracklib -debug -jemalloc -latin1 -numa -profiling -router -selinux -tcmalloc -test KERNEL="linux")
Homepage: https://www.mysql.com/
Description: A fast, multi-threaded, multi-user SQL database server |
| Quote: | and if it's supposed to be like that then, what should be done in order to emerge the new one, erase the old, without losing anything valuable..?
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Who knows...
I'm waiting a bit more if anyone else post some info. |
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halcon
l33t
Joined: 15 Dec 2019
Posts: 629
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| Posted: Sun Jul 26, 2020 11:59 pm Post subject: |
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| Try to re-sync the tree, this issue should have been resolved recently, similarly to maria-db issue. |
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Fitap
Guru
Joined: 13 Mar 2011
Posts: 444
Location: Rosario, Argentina
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| Posted: Mon Jul 27, 2020 2:20 am Post subject: |
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| Thanks for response halcon, re-sync the tree solved this issue. |
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jhon987
Guru
Joined: 18 Nov 2013
Posts: 301
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| Posted: Mon Jul 27, 2020 8:52 am Post subject: |
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| halcon wrote: | | Try to re-sync the tree, this issue should have been resolved recently, similarly to maria-db issue. |
indeed, thanks |
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hanj
Veteran
Joined: 19 Aug 2003
Posts: 1490
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| Posted: Tue Jul 28, 2020 3:14 pm Post subject: |
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| halcon wrote: | | Try to re-sync the tree, this issue should have been resolved recently, similarly to maria-db issue. |
Hmmm. Just like all of you, running into the same problem.
| Code: | emerge -pv mysql
These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild NS ] dev-db/mysql-8.0.20-r1:8.0::gentoo [8.0.20:0::gentoo] USE="latin1 perl server -cjk -cracklib -debug -jemalloc -libressl -numa -profiling -router (-selinux) -tcmalloc -test" 260,049 KiB
[uninstall ] dev-db/mysql-8.0.20::gentoo USE="latin1 perl server -cjk -cracklib -debug -jemalloc -libressl -numa -profiling -router (-selinux) -tcmalloc -test"
[blocks b ] dev-db/mysql:0 ("dev-db/mysql:0" is blocking dev-db/mysql-8.0.20-r1) |
Emerge ends in fail with file collisions.
I just ran an emerge --sync and it's still trying to pull in a new slot?
Thanks!
hanji
_________________
Server Admin Blog - Uno-Code.com |
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halcon
l33t
Joined: 15 Dec 2019
Posts: 629
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| Posted: Tue Jul 28, 2020 3:54 pm Post subject: |
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| hanj wrote: | | I just ran an emerge --sync and it's still trying to pull in a new slot? |
Pulling in a new slot is fine. The fix was so the previous version, installed in the slot 0, would not lead to file collisions. Not sure why your emerge fails... |
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