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KintaroBC
n00b
Joined: 15 Feb 2014
Posts: 63
Location: Australia
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 Posted: Thu Oct 23, 2014 6:38 pm Post subject: while updating emerge failed: sys-apps/coreutils |
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I've recently installed Gentoo on a system which will not update. I also have problems building OpenSSL, and they are why I decided to run an update.
I am running 'emerge --update --deep --with-bdeps=y --newuse @world' to update the system. It fails while building sys-apps/coreutils.
Here is the end of the build log:
| Code: |
src/ginstall src/ginstall '/var/tmp/portage/sys-apps/coreutils-8.21/image//usr/bin/./install'
/bin/sh: line 24: 870 Illegal instruction src/ginstall $files "/var/tmp/portage/sys-apps/coreutils-8.21/image//usr/bin$dir"
Makefile:5012: recipe for target 'install-binPROGRAMS' failed
make[3]: *** [install-binPROGRAMS] Error 132
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/var/tmp/portage/sys-apps/coreutils-8.21/work/coreutils-8.21'
Makefile:7551: recipe for target 'install-am' failed
make[2]: *** [install-am] Error 2
make[2]: Leaving directory '/var/tmp/portage/sys-apps/coreutils-8.21/work/coreutils-8.21'
Makefile:7063: recipe for target 'install-recursive' failed
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sys-apps/coreutils-8.21/work/coreutils-8.21'
Makefile:7545: recipe for target 'install' failed
make: *** [install] Error 2
emake failed
* ERROR: sys-apps/coreutils-8.21::gentoo failed (install phase):
* (no error message)
*
* Call stack:
* ebuild.sh, line 93: Called src_install
* environment, line 2264: Called die
* The specific snippet of code:
* emake install DESTDIR="${D}" || die;
*
* If you need support, post the output of `emerge --info '=sys-apps/coreutils-8.21::gentoo'`,
* the complete build log and the output of `emerge -pqv '=sys-apps/coreutils-8.21::gentoo'`.
* The complete build log is located at '/var/tmp/portage/sys-apps/coreutils-8.21/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/sys-apps/coreutils-8.21/temp/environment'.
* Working directory: '/var/tmp/portage/sys-apps/coreutils-8.21/work/coreutils-8.21'
* S: '/var/tmp/portage/sys-apps/coreutils-8.21/work/coreutils-8.21'
|
emerge --info:
| Code: |
Portage 2.2.8-r2 (hardened/linux/amd64, gcc-4.7.3, glibc-2.19-r1, 3.15.10-hardened-r1-CAPENA01 x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-3.15.10-hardened-r1-CAPENA01-x86_64-Intel-R-_Xeon-R-_CPU_E5-1620_v2_@_3.70GHz-with-gentoo-2.2
KiB Mem: 1010852 total, 625172 free
KiB Swap: 499708 total, 499708 free
Timestamp of tree: Thu, 23 Oct 2014 16:15:01 +0000
ld GNU ld (Gentoo 2.23.2 p1.0) 2.23.2
app-shells/bash: 4.2_p53
dev-lang/perl: 5.18.2-r1
dev-lang/python: 2.7.7, 3.3.5-r1, 3.4.1
dev-util/pkgconfig: 0.28-r1
sys-apps/baselayout: 2.2
sys-apps/openrc: 0.12.4
sys-apps/sandbox: 2.6-r1
sys-devel/autoconf: 2.69
sys-devel/automake: 1.13.4
sys-devel/binutils: 2.23.2
sys-devel/gcc: 4.7.3-r1
sys-devel/gcc-config: 1.7.3
sys-devel/libtool: 2.4.2-r1
sys-devel/make: 4.0-r1
sys-kernel/linux-headers: 3.13 (virtual/os-headers)
sys-libs/glibc: 2.19-r1
Repositories: gentoo
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.mirrors.tera-byte.com/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync1.ca.gentoo.org/gentoo-portage"
USE="acl amd64 bash-completion berkdb bzip2 cli cracklib crypt cxx dri gdbm geoip gmp gzip hardened iconv ipv6 justify mmx modules multilib ncurses nls nptl offensive openmp pam pax_kernel pcre perl readline session sockets sse sse2 ssl syslog tcpd unicode urandom xattr xtpax zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
=================================================================
Package Settings
=================================================================
sys-apps/coreutils-8.21 was built with the following:
USE="acl nls (xattr) -caps -gmp (-selinux) -static -vanilla" ABI_X86="64"
CFLAGS="-O2 -pipe"
CXXFLAGS="-O2 -pipe"
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emerge -pqv...
| Code: |
[ebuild R ] sys-apps/coreutils-8.21 USE="acl gmp* nls (xattr) -caps (-selinux) -static -vanilla"
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The full build.log: https://privatepaste.com/a342bba74b |
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VoidMage
Watchman
Joined: 14 Oct 2006
Posts: 6196
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| Posted: Thu Oct 23, 2014 9:21 pm Post subject: |
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"Illegal instruction" usually is a "you blew it" kind of a problem, but with "-march=native" it shouldn't really happen unless either your CPU wasn't fully supported by this particular version of gcc yet or you've stumbled upon a gcc bug.
Was "-march=native" in your CFLAGS right from the start or did you have another value there first ?
On (most likely) unrelated note: this machine seems to have very little memory... |
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KintaroBC
n00b
Joined: 15 Feb 2014
Posts: 63
Location: Australia
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| Posted: Thu Oct 23, 2014 11:23 pm Post subject: |
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| VoidMage wrote: | "Illegal instruction" usually is a "you blew it" kind of a problem, but with "-march=native" it shouldn't really happen unless either your CPU wasn't fully supported by this particular version of gcc yet or you've stumbled upon a gcc bug.
Was "-march=native" in your CFLAGS right from the start or did you have another value there first ?
On (most likely) unrelated note: this machine seems to have very little memory... |
I set march=native option while doing the install at the step that option is set in the handbook. Originally it was not there in the stage3. |
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Jaglover
Watchman
Joined: 29 May 2005
Posts: 8291
Location: Saint Amant, Acadiana
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Hu
Moderator
Joined: 06 Mar 2007
Posts: 21633
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| Posted: Fri Oct 24, 2014 1:16 am Post subject: |
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| In some cases, illegal instruction can be caused by bad RAM causing a bit flip in the code (either at compile time or when the program runs). I think a badly overheated CPU could also raise a bogus illegal instruction exception. |
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KintaroBC
n00b
Joined: 15 Feb 2014
Posts: 63
Location: Australia
|
| Posted: Fri Oct 24, 2014 1:25 am Post subject: |
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| Jaglover wrote: | Can you replicate this error using following command: | Code: | | MAKEOPTS="-j1" emerge -1 coreutils |
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Yes, the same problem occurs.
| Quote: |
In some cases, illegal instruction can be caused by bad RAM causing a bit flip in the code (either at compile time or when the program runs). I think a badly overheated CPU could also raise a bogus illegal instruction exception.
|
I don't see why the same problem should happen over and over in that case. |
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KintaroBC
n00b
Joined: 15 Feb 2014
Posts: 63
Location: Australia
|
| Posted: Fri Oct 24, 2014 2:30 am Post subject: |
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I thought I should post the problems I had building openssh to use the openssl I built rather than the bindist. This is why I ran the update, and the error might have a similar cause. So I hope this might give more clues on what is happening.
| Code: |
configure: error: OpenSSH has no source of random numbers. Please configure OpenSSL with an entropy source or re-run configure using one of the --with-prngd-port or --with-prngd-socket options
!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/net-misc/openssh-6.6_p1-r1/work/openssh-6.6p1/config.log
* ERROR: net-misc/openssh-6.6_p1-r1::gentoo failed (configure phase):
* econf failed
*
* Call stack:
* ebuild.sh, line 93: Called src_configure
* environment, line 3818: Called econf '--with-ldflags=-Wl,-O1 -Wl,--as-needed' '--disable-strip' '--with-pid-dir=/var/run' '--sysconfdir=/etc/ssh' '--libexecdir=/usr/lib64/misc' '--datadir=/usr/share/openssh' '--with-privsep-path=/var/empty' '--with-privsep-user=sshd' '--with-md5-passwords' '--with-ssl-engine' '--with-pam' '--without-kerberos5' '--without-ldns' '--without-libedit' '--without-selinux' '--without-skey' '--with-tcp-wrappers'
* phase-helpers.sh, line 584: Called die
* The specific snippet of code:
* die "econf failed"
*
* If you need support, post the output of `emerge --info '=net-misc/openssh-6.6_p1-r1::gentoo'`,
* the complete build log and the output of `emerge -pqv '=net-misc/openssh-6.6_p1-r1::gentoo'`.
* The complete build log is located at '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/temp/environment'.
* Working directory: '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/work/openssh-6.6p1'
* S: '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/work/openssh-6.6p1'
>>> Failed to emerge net-misc/openssh-6.6_p1-r1, Log file:
>>> '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/temp/build.log'
* Messages for package net-misc/openssh-6.6_p1-r1:
* ERROR: net-misc/openssh-6.6_p1-r1::gentoo failed (configure phase):
* econf failed
*
* Call stack:
* ebuild.sh, line 93: Called src_configure
* environment, line 3818: Called econf '--with-ldflags=-Wl,-O1 -Wl,--as-needed' '--disable-strip' '--with-pid-dir=/var/run' '--sysconfdir=/etc/ssh' '--libexecdir=/usr/lib64/misc' '--datadir=/usr/share/openssh' '--with-privsep-path=/var/empty' '--with-privsep-user=sshd' '--with-md5-passwords' '--with-ssl-engine' '--with-pam' '--without-kerberos5' '--without-ldns' '--without-libedit' '--without-selinux' '--without-skey' '--with-tcp-wrappers'
* phase-helpers.sh, line 584: Called die
* The specific snippet of code:
* die "econf failed"
*
* If you need support, post the output of `emerge --info '=net-misc/openssh-6.6_p1-r1::gentoo'`,
* the complete build log and the output of `emerge -pqv '=net-misc/openssh-6.6_p1-r1::gentoo'`.
* The complete build log is located at '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/temp/environment'.
* Working directory: '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/work/openssh-6.6p1'
* S: '/var/tmp/portage/net-misc/openssh-6.6_p1-r1/work/openssh-6.6p1'
|
emerge --info
| Code: |
Portage 2.2.8-r2 (hardened/linux/amd64, gcc-4.7.3, glibc-2.19-r1, 3.15.10-hardened-r1-CAPENA01 x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-3.15.10-hardened-r1-CAPENA01-x86_64-Intel-R-_Xeon-R-_CPU_E5-1620_v2_@_3.70GHz-with-gentoo-2.2
KiB Mem: 1010852 total, 253000 free
KiB Swap: 499708 total, 499708 free
Timestamp of tree: Fri, 24 Oct 2014 01:45:01 +0000
ld GNU ld (Gentoo 2.23.2 p1.0) 2.23.2
app-shells/bash: 4.2_p53
dev-lang/perl: 5.18.2-r1
dev-lang/python: 2.7.7, 3.3.5-r1, 3.4.1
dev-util/pkgconfig: 0.28-r1
sys-apps/baselayout: 2.2
sys-apps/openrc: 0.12.4
sys-apps/sandbox: 2.6-r1
sys-devel/autoconf: 2.69
sys-devel/automake: 1.13.4
sys-devel/binutils: 2.23.2
sys-devel/gcc: 4.7.3-r1
sys-devel/gcc-config: 1.7.3
sys-devel/libtool: 2.4.2-r1
sys-devel/make: 4.0-r1
sys-kernel/linux-headers: 3.13 (virtual/os-headers)
sys-libs/glibc: 2.19-r1
Repositories: gentoo
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.mirrors.tera-byte.com/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync1.ca.gentoo.org/gentoo-portage"
USE="acl amd64 bash-completion berkdb bzip2 cli cracklib crypt cxx dri gdbm geoip gmp gzip hardened iconv ipv6 justify mmx modules multilib ncurses nls nptl offensive openmp pam pax_kernel pcre perl readline session sockets sse sse2 ssl syslog tcpd unicode urandom xattr xtpax zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
=================================================================
Package Settings
=================================================================
net-misc/openssh-6.6_p1-r1 was built with the following:
USE="bindist hpn pam tcpd -X -X509 -kerberos -ldap -ldns -libedit (-selinux) -skey -static" ABI_X86="64"
CFLAGS="-O2 -pipe"
CXXFLAGS="-O2 -pipe"
|
emerge -pqv
| Code: |
[ebuild R ] net-misc/openssh-6.6_p1-r1 USE="hpn pam tcpd -X -X509 -bindist* -kerberos -ldap -ldns -libedit (-selinux) -skey -static"
|
Full build log: https://privatepaste.com/8c4034a447 |
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Hu
Moderator
Joined: 06 Mar 2007
Posts: 21633
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| Posted: Fri Oct 24, 2014 3:13 am Post subject: |
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| KintaroBC wrote: | | Quote: |
In some cases, illegal instruction can be caused by bad RAM causing a bit flip in the code (either at compile time or when the program runs). I think a badly overheated CPU could also raise a bogus illegal instruction exception.
|
I don't see why the same problem should happen over and over in that case. |
As I said, if it happened at the time of compilation, then the installed program would be bad, and would always fault. If the bit flip was at runtime, it would not be perfectly reproducible. |
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KintaroBC
n00b
Joined: 15 Feb 2014
Posts: 63
Location: Australia
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| Posted: Fri Oct 24, 2014 7:03 am Post subject: |
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| This problem happened with the 16-10-2014 Gentoo hardened Stage 3. The checksum verified for it, and I didn't have the problem with the older 09-10-2014 stage 3. I suspect that the stage 3 tarball itself is at fault. The problem happened right after the install. |
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Portage & Programming
