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snakes1100
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PostPosted: Thu Nov 15, 2012 3:40 pm    Post subject: Portage update & now its ignoring masked packages.... Reply with quote

Did a sync today on a system, after the sync it reported a portage update, ok no problem, did the update, decided to do a emerge world, it appears that its totally ignoring masked packages now.

I found one topic on another site stating this was a portage 2.3.4 bug, which im not running anyways.

Currently installed portage:

sys-apps/portage-2.1.11.31 was built with the following:
USE="(ipc) (multilib) -build -doc -epydoc (-pypy1_9) -python2 -python3 (-selinux) -xattr" LINGUAS="-pl"


Code:
mail portage # emerge -uav world

 * IMPORTANT: 5 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.


These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U  ] sys-devel/patch-2.7.1-r1 [2.7.1] USE="-static {-test} -xattr" 0 kB
[ebuild  N     ] dev-libs/libaio-0.3.109-r3  USE="(multilib) -static-libs" 43 kB
[ebuild  N     ] virtual/python-argparse-1  PYTHON_TARGETS="python2_7 python3_2 -jython2_5 -pypy1_8 -pypy1_9 -python2_5 -python2_6 -python3_1 (-python3_3)" 0 kB
[ebuild     U  ] app-shells/bash-4.2_p39 [4.2_p37] USE="net nls readline -afs -bashlogger -examples -mem-scramble -plugins -vanilla" 3 kB
[ebuild     U  ] sys-apps/less-456 [451] USE="pcre unicode" 304 kB
[ebuild     U  ] app-admin/logrotate-3.8.3 [3.8.2] USE="acl (-selinux)" 51 kB
[ebuild     U  ] sys-apps/coreutils-8.20 [8.19] USE="acl nls -caps -gmp (-selinux) -static -vanilla -xattr" 5,156 kB
[ebuild     U  ] sys-devel/binutils-2.23 [2.22.90] USE="cxx nls zlib -multislot -multitarget -static-libs {-test} -vanilla" 20,914 kB
[ebuild     U  ] sys-apps/mlocate-0.26 [0.25] USE="nls (-selinux)" 351 kB
[ebuild     U  ] sys-process/procps-3.3.4 [3.3.3] USE="ncurses unicode -static-libs" 512 kB
[ebuild  NS    ] sys-kernel/gentoo-sources-3.6.6:3.6.6 [3.4.9:3.4.9, 3.6.0:3.6.0, 3.6.2:3.6.2] USE="-build -deblob -symlink" 172 kB
[ebuild     U  ] www-servers/nginx-1.2.4 [1.2.2] USE="http http-cache ipv6 pcre ssl -aio -debug -libatomic -pcre-jit (-selinux) -vim-syntax" NGINX_MODULES_HTTP="auth_basic autoindex cache_purge flv gzip gzip_static limit_req proxy realip rewrite slowfs_cache split_clients stub_status upstream_ip_hash userid -access -addition -browser -charset -dav -degradation -empty_gif -fancyindex -fastcgi -geo -geoip -headers_more -image_filter -limit_conn -lua -map -memcached -mp4 -passenger -perl -push -random_index -referer -scgi -secure_link -ssi -sub -upload -upload_progress -uwsgi -xslt" NGINX_MODULES_MAIL="-imap -pop3 -smtp" 708 kB
[ebuild     U  ] app-portage/gentoolkit-0.3.0.7 [0.3.0.6-r3] 3,117 kB
[ebuild     U  ] dev-db/mysql-5.5.28 [5.1.62-r1] USE="berkdb* community extraengine latin1 perl ssl -cluster -debug -embedded -jemalloc% -max-idx-128 -minimal -profiling (-selinux) -static -systemtap% -tcmalloc% {-test} (-big-tables%*) (-pbxt%) (-xtradb%)" 25,952 kB
[ebuild     U  ] virtual/mysql-5.5 [5.1] USE="-embedded -minimal -static" 0 kB
[ebuild     U  ] dev-lang/php-5.3.18:5.3 [5.3.17:5.3] USE="apache2 bcmath berkdb bzip2 cgi cli crypt ctype curl exif filter ftp gd gdbm hash iconv ipv6 json kerberos mysql mysqli nls phar pic posix readline session simplexml soap sockets ssl tidy tokenizer truetype unicode xml xmlreader xmlrpc xmlwriter xpm xsl zlib -calendar -cdb -cjk -curlwrappers -debug -doc -embed -enchant -fileinfo -firebird -flatfile -fpm (-frontbase) -gmp -imap -inifile -intl -iodbc (-kolab) -ldap -ldap-sasl -libedit -mhash -mssql -mysqlnd -oci8-instant-client -odbc -pcntl -pdo -postgres -qdbm -recode (-selinux) -sharedmem -snmp -spell -sqlite2 -sqlite3 (-sybase-ct) -sysvipc -threads -wddx -zip (-suhosin%*)" 11,077 kB
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Genone
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PostPosted: Fri Nov 16, 2012 11:10 am    Post subject: Re: Portage update & now its ignoring masked packages... Reply with quote

snakes1100 wrote:
its totally ignoring masked packages now.

That's a bit vague to give any useful hints. What output did you expect compared to the one you posted?
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snakes1100
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PostPosted: Fri Nov 16, 2012 2:48 pm    Post subject: Reply with quote

Vague?

As you can see, its clearly trying to install masked packages, for example mysql 5.5.x which is masked, not to mention the other 10 or so that are masked as well.

It shouldnt be installing any of those masked packages.
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John R. Graham
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PostPosted: Fri Nov 16, 2012 2:52 pm    Post subject: Reply with quote

Let's see your
Code:
emerge --info
then, please.

- John
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dol-sen
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PostPosted: Fri Nov 16, 2012 3:02 pm    Post subject: Reply with quote

Code:
[ebuild     U  ] dev-db/mysql-5.5.28 ...
[ebuild     U  ] virtual/mysql-5.5...


It should indicate the that they are masked in that output which they do not. So, yes waiting on emerge --info.

Also you may have had a bad sync in which the profile/.../package.mask file was missing. try another sync.
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Genone
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PostPosted: Fri Nov 16, 2012 4:01 pm    Post subject: Reply with quote

snakes1100 wrote:
Vague?

As you can see, its clearly trying to install masked packages, for example mysql 5.5.x which is masked, not to mention the other 10 or so that are masked as well.

For reference:
- "totally ignoring masked packages" could mean either that it ignores the mask status of a package (which you're referring to), or that totally ignores the packages when masked instead of listing them as masked.
- "masked" status depends on your system configuration as well as information in the tree. So without further info I cannot see which packages in your first post should be considered "masked" (I'm not going to cross-check everything listed).
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snakes1100
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PostPosted: Fri Nov 16, 2012 4:09 pm    Post subject: Reply with quote

As requested.

This make.conf is used across 3 servers, only the two older installs are doing this.

mail ~ # emerge --info
Portage 2.1.11.31 (default/linux/amd64/10.0, gcc-4.5.4, glibc-2.15-r3, 3.4.9-gentoo x86_64)
=================================================================
System uname: Linux-3.4.9-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5620_@_2.40GHz-with-gentoo-2.2
Timestamp of tree: Thu, 15 Nov 2012 14:45:01 +0000
ld GNU ld (GNU Binutils) 2.22.90.20120727
app-shells/bash: 4.2_p37
dev-lang/python: 2.7.3-r2, 3.2.3-r1
dev-util/cmake: 2.8.9
dev-util/pkgconfig: 0.27.1
sys-apps/baselayout: 2.2
sys-apps/openrc: 0.11.2
sys-apps/sandbox: 2.6
sys-devel/autoconf: 2.69
sys-devel/automake: 1.11.6, 1.12.4
sys-devel/binutils: 2.22.90
sys-devel/gcc: 4.5.4, 4.6.3
sys-devel/gcc-config: 1.7.3
sys-devel/libtool: 2.4.2
sys-devel/make: 3.82-r4
sys-kernel/linux-headers: 3.6 (virtual/os-headers)
sys-libs/glibc: 2.15-r3
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext- active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-ow ned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.df.lth.se/pub/gentoo/ rsync://ftp.df.lth.se/pub/gentoo/ ftp://ftp.df.lth.se/pub/gentoo/ ftp://mirror.mdfnet.se/g entoo http://mirror.mdfnet.se/gentoo"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --ti meout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.se.gentoo.org/gentoo-portage"
USE="acl amd64 apache2 authdaemond bcmath berkdb big-tables bzip2 cgi cli community cracklib crypt ctype cups curl cxx dlz dri exif extraen gine fam filter fortran ftp gd gdbm gpm hash iconv id64 ipv6 json kerberos latin1 mmx modules mudflap multilib mysql mysqli ncurses nls npt l openmp pam pcre perl phar pic posix pppd readline reflection session simplexml soap sockets spl sse sse2 ssl suhosin tcpd tidy tokenizer truetype unicode urandom vda vhosts xml xmlreader xmlrpc xmlwriter xpm xsl zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca01 06 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci " ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mul aw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias asis auth_basic auth_digest authn_alias authn_anon authn_db d authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache charset_lite cgi cgid dav dav_fs dav_lock deflate dir dumpio env expires filter include info log_config log_forensic logio mem_cache mime mime_magic ne gotiation rewrite setenvif speling status userdir usertrack version vhost_alias" APACHE2_MPMS="prefork" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC=" glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES=" bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NGINX _MODULES_HTTP="auth_basic autoindex flv gzip gzip_static proxy realip rewrite slowfs_cache stub_status limit_req cache_purge split_clients upstream_ip_hash userid upstream_fair" PHP_TARGETS="php5-3" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU " VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota 2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COM PRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
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snakes1100
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PostPosted: Fri Nov 16, 2012 4:16 pm    Post subject: Reply with quote

dol-sen wrote:
Code:
[ebuild     U  ] dev-db/mysql-5.5.28 ...
[ebuild     U  ] virtual/mysql-5.5...


It should indicate the that they are masked in that output which they do not. So, yes waiting on emerge --info.

Also you may have had a bad sync in which the profile/.../package.mask file was missing. try another sync.


I did actually re-sync the systems 3 times when i noticed it two days ago, just to verify that is wasnt something stoopid like that.

I re-synced it again this morning.
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John R. Graham
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PostPosted: Fri Nov 16, 2012 4:28 pm    Post subject: Reply with quote

Your emerge --info shows that you've unmasked testing branch. Did you edit your make.conf recently?

- John
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PostPosted: Fri Nov 16, 2012 5:24 pm    Post subject: Reply with quote

make.conf hasnt been modified since Oct 23.

-rw-r--r-- 1 root root 1537 Oct 23 01:58 make.conf

Thats whats strange, nothing was touched.

There are 3 servers running this same make.conf, two have been running since early Oct. & have this issue, the 3rd server w/ the same make.conf was reloaded last week, its the only server running w/ make.conf residing in etc/portage since the move.

make.conf on all 3 servers have
ACCEPT_KEYWORDS="~amd64"

I have never used package.accept_keywords on these servers, it doesnt exist on any server.
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John R. Graham
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PostPosted: Fri Nov 16, 2012 6:16 pm    Post subject: Reply with quote

So, this line right here
Code:
ACCEPT_KEYWORDS="~amd64"
unmasks the testing branch. If that's the way it's always been then, well, maybe the hard masks on those packages were just recently removed. It appears that Portage and emerge are behaving normally.

- John
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Last edited by John R. Graham on Fri Nov 16, 2012 6:22 pm; edited 1 time in total
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PostPosted: Fri Nov 16, 2012 6:21 pm    Post subject: Reply with quote

They must have been, i didnt even realize it was in there until today.

Its now commented out, thanks for the help guys, mistake on my part for not paying better attention to what was actually in there.
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